# List of top-scoring protein chains for T0289.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bo9A 308 1.98e-30 2boaA 404 2.94e-30 1cpb 306 1.09e-29 1aye c.56.5.1 33826 1zliA 309 3.52e-29 1z5rA 306 6.16e-29 1dtdA 303 8.03e-29 1aye c.56.5.1 33823 1kwmA 402 8.34e-29 c.56.5.1,d.58.3.1 73079,73080 1aye 401 1.94e-28 1aye c.56.5.1,d.58.3.1 33824,39065 1nsa 395 9.74e-28 1aye c.56.5.1,d.58.3.1 33825,39066 1h8lA 380 5.40e-26 b.3.2.1,c.56.5.1 65737,65738 1yme 309 1.03e-25 1aye c.56.5.1 33804 1m4lA 307 1.15e-25 c.56.5.1 78604 1pytB 309 1.66e-25 1aye c.56.5.1 33820 2ctc 307 1.85e-25 1aye c.56.5.1 33802 2c1cA 312 3.91e-25 1bavA 309 4.50e-25 1aye c.56.5.1 33806 5cpa 307 5.06e-25 1aye c.56.5.1 33811 1cbx 307 5.45e-25 1aye c.56.5.1 33813 1pca 403 6.54e-25 1aye c.56.5.1,d.58.3.1 33822,39063 1obr 326 3.67e-23 1aye c.56.5.2 33828 1jqgA 433 1.54e-22 c.56.5.1,d.58.3.1 71791,71792 1uwyA 426 1.82e-21 b.3.2.1,c.56.5.1 100130,100131 1yw6A 335 8.58e-21 1yw4A 341 2.48e-19 2g9dA 350 2.81e-16 2bcoA 350 6.45e-16 1gq6A 313 1.40e+00 c.42.1.1 70341 1twfB 1224 1.96e+00 1thg 544 2.09e+00 1thg c.69.1.17 34763 1pbyB 337 3.05e+00 b.69.2.2 94422 1m22A 503 3.82e+00 c.117.1.1 78464 1vcoA 550 4.12e+00 c.23.16.1,c.37.1.10 108508,108509 1vcnA 550 4.47e+00 c.23.16.1,c.37.1.10 108506,108507 1xo6A 530 7.53e+00 1d6mA 653 8.06e+00 1d6mA e.10.1.1 43248 1og3A 226 8.85e+00 d.166.1.3 92863 1xnwA 530 8.97e+00 1og4A 226 9.32e+00 d.166.1.3 92864 1gxyA 226 9.73e+00 d.166.1.3 76380 1gzjA 304 1.22e+01 c.1.8.3 70813 1rwzA 245 1.54e+01 d.131.1.2,d.131.1.2 98005,98006 1kxu 333 1.54e+01 1jkw a.74.1.1,a.74.1.1 18358,18359 1a5z 319 1.55e+01 1ceqA c.2.1.5,d.162.1.1 30181,42148 1jwqA 179 1.70e+01 c.56.5.6 90921 1jkw 323 1.71e+01 1jkw a.74.1.1,a.74.1.1 18356,18357 1i7dA 659 1.74e+01 1d6mA e.10.1.1 61886 1mj4A 82 1.80e+01 d.120.1.1 79189 1yq1A 208 1.84e+01 1m2vB 926 1.90e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78497,78498,78499,78500,78501 1gjiA 275 1.94e+01 b.1.18.1,b.2.5.3 70187,70188 1s6yA 450 1.99e+01 c.2.1.5,d.162.1.2 105314,105315 1v03A 565 1.99e+01 c.1.8.4 108200 1h1nA 305 2.04e+01 c.1.8.3 70855 1ohvA 472 2.23e+01 c.67.1.4 93031 1bpb 248 2.30e+01 1bpyA a.60.12.1,d.218.1.2 75811,75812 1cqwA 295 2.41e+01 1b6g c.69.1.8 34679 1rpl 251 2.43e+01 1bpyA a.60.12.1,d.218.1.2 75933,75934 1qgnA 445 2.57e+01 1ibjA c.67.1.3 34403 1huzA 335 2.59e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 61281,75850,75851 1bpe 335 2.61e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 18076,75815,75816 1ypxA 375 2.72e+01 1uebA 184 2.74e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1bn7A 294 2.76e+01 1bn6A c.69.1.8 34677 1y4wA 518 2.79e+01 2gfqA 298 2.82e+01 1vhmA 195 2.83e+01 d.110.2.1 100691 1ck7A 631 2.91e+01 1ck7A b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 1f74A 293 2.93e+01 1nal3 c.1.10.1 29079 1npeA 267 2.93e+01 b.68.5.1 92032 1khtA 192 3.24e+01 c.37.1.1 84401 1p32A 209 3.40e+01 1p32A d.25.1.1 38379 1jn3A 251 3.40e+01 1bpyA a.60.12.1,d.218.1.2 75864,75865 1digA 306 3.61e+01 1a4iA c.2.1.7,c.58.1.2 30282,33930 1pzdA 322 3.72e+01 b.1.10.3,d.105.1.2 95413,95414 1yge 839 3.76e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1v02A 565 3.78e+01 c.1.8.4 108194 1v04A 355 3.83e+01 b.68.6.2 100240 1fgqA 839 3.85e+01 1yge a.119.1.1,b.12.1.1 59826,59827 1r4mB 431 3.89e+01 c.111.1.2 97000 1fgoA 839 3.90e+01 1yge a.119.1.1,b.12.1.1 59824,59825 2f57A 317 3.92e+01 1un2A 197 3.96e+01 c.47.1.13 99645 1fgrA 839 4.00e+01 1yge a.119.1.1,b.12.1.1 59828,59829 1obaA 339 4.01e+01 b.109.1.1,c.1.8.8 92753,92754 1gehA 444 4.02e+01 c.1.14.1,d.58.9.1 65181,65182 1v02E 565 4.06e+01 c.1.8.4 108198 1orqB 219 4.13e+01 b.1.1.1,b.1.1.2 87346,87347 1ki9A 192 4.20e+01 c.37.1.1 84404 1fgtA 839 4.26e+01 1yge a.119.1.1,b.12.1.1 59830,59831 1fgmA 839 4.30e+01 a.119.1.1,b.12.1.1 65009,65010 1qh8B 519 4.35e+01 1qguB c.92.2.3 35634 1a4iA 301 4.40e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 2bvyA 475 4.53e+01 1tt5B 434 4.58e+01 c.111.1.2 107292 1ex2A 189 4.67e+01 1ex2A c.51.4.2 33225 1uwiA 489 4.77e+01 1ycdA 243 4.79e+01 1y4kA 839 4.82e+01 1cvuA 552 4.97e+01 1cqeA a.93.1.2,g.3.11.1 18716,44259 2fmpA 335 5.01e+01 1ibjA 464 5.13e+01 1ibjA c.67.1.3 62162 1xebA 150 5.19e+01 1wnaA 131 5.20e+01 2c5uA 375 5.22e+01 1c7qA 445 5.22e+01 2pgi c.80.1.2 35307 1r9jA 673 5.30e+01 1lvoA 302 5.31e+01 b.47.1.4 74284 1yn9A 169 5.34e+01 2bt7A 170 5.42e+01 2ampA 304 5.43e+01 1r4xA 275 5.53e+01 b.1.10.3,d.105.1.2 97054,97055 2bsfA 176 5.67e+01 1ynuA 473 5.86e+01 1yy3A 346 5.98e+01 1u1iA 392 6.04e+01 c.2.1.3,d.81.1.3 107582,107583 1ddxA 552 6.14e+01 1cqeA a.93.1.2,g.3.11.1 18732,44275 1pt7A 437 6.51e+01 c.123.1.1 95093 1yovB 444 6.56e+01 1q7eA 428 6.59e+01 c.123.1.1 96035 1itxA 419 6.65e+01 c.1.8.5,d.26.3.1 71425,71426 1nkvA 256 6.83e+01 c.66.1.21 80577 1h09A 338 6.84e+01 b.109.1.1,c.1.8.8 83420,83421 2b6gA 119 6.85e+01 1cjaA 342 6.89e+01 1cjaA d.144.1.3 41708 1bxkA 355 6.96e+01 1bxkA c.2.1.2 29803 1dbxA 158 7.23e+01 1dbuA d.116.1.1 40928 1vfoA 585 7.31e+01 1r6dA 337 7.57e+01 c.2.1.2 97148 1vdwA 254 7.60e+01 e.7.1.1 100569 1w9xA 481 7.62e+01 1yk9A 204 7.62e+01 2d3dA 88 7.83e+01 1wzkA 585 8.00e+01 1wzlA 585 8.08e+01 1ykiA 217 8.09e+01 1w66A 232 8.12e+01 1cd3F 426 8.13e+01 2bpa1 b.121.5.1 23276 1j6uA 469 8.14e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1vb9A 585 8.16e+01 1gowA 489 8.21e+01 1qvbA c.1.8.4 28981 1ur4A 399 8.33e+01 1wueA 386 8.35e+01 2fe9A 86 8.38e+01 1cvjA 190 8.38e+01 1cvjB d.58.7.1,d.58.7.1 39191,39192 1mtoA 319 8.51e+01 c.89.1.1 79458 3hfmH 215 8.56e+01 1igtB b.1.1.1,b.1.1.2 19977,21033 1wflA 74 8.72e+01 1kxhA 448 8.74e+01 b.71.1.1,c.1.8.1 73151,73152 1jf6A 585 8.81e+01 b.1.18.2,b.71.1.1,c.1.8.1 71650,71651,71652 1jf5A 585 8.98e+01 b.1.18.2,b.71.1.1,c.1.8.1 71644,71645,71646