# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dtdA 303 7.37e-28 1aye c.56.5.1 33823 1m4lA 307 8.83e-25 c.56.5.1 78604 1jwqA 179 2.03e-02 c.56.5.6 90921 1pe1A 267 3.18e-02 c.1.10.4 94591 1cjaA 342 1.70e-01 1cjaA d.144.1.3 41708 1eceA 358 2.08e-01 1eceA c.1.8.3 28813 1m22A 503 2.40e-01 c.117.1.1 78464 1h1nA 305 2.69e-01 c.1.8.3 70855 1bn7A 294 3.34e-01 1bn6A c.69.1.8 34677 1j77A 209 4.90e-01 1j77A a.132.1.2 62674 1edg 380 4.92e-01 1edg c.1.8.3 28807 1t6cA 315 9.10e-01 c.55.1.8,c.55.1.8 106558,106559 1pbyB 337 1.01e+00 b.69.2.2 94422 1j1iA 296 1.23e+00 c.69.1.10 83977 1uuyA 167 1.31e+00 c.57.1.1 108059 1uuqA 440 1.34e+00 c.1.8.3 100015 1gq6A 313 1.43e+00 c.42.1.1 70341 1iyhA 198 1.77e+00 a.45.1.1,c.47.1.5 83790,83791 1i7dA 659 1.85e+00 1d6mA e.10.1.1 61886 1dozA 309 1.87e+00 1ak1 c.92.1.1 35592 1h7eA 245 1.93e+00 c.68.1.13 60717 1bif 469 2.17e+00 1bif c.37.1.7,c.60.1.4 31961,34003 1yn9A 169 2.23e+00 1j2rA 199 2.27e+00 c.33.1.3 90788 1rwzA 245 2.32e+00 d.131.1.2,d.131.1.2 98005,98006 1fcdA 401 2.48e+00 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1ceo 343 2.62e+00 1ceo c.1.8.3 28808 1m7yA 435 2.91e+00 c.67.1.4 78761 1g94A 448 3.18e+00 b.71.1.1,c.1.8.1 65169,65170 1dc1A 323 3.26e+00 1dc1A c.52.1.11 33321 1vd5A 377 3.30e+00 a.102.1.7 108518 1qe3A 489 3.30e+00 2bce c.69.1.1 34630 1tn6A 382 3.31e+00 1wnaA 131 3.33e+00 1mqoA 227 3.66e+00 d.157.1.1 103846 1mf7A 194 3.76e+00 c.62.1.1 84937 1nwwA 149 4.23e+00 d.17.4.8 86306 3sdhA 146 4.77e+00 3sdhA a.1.1.2 14984 1sbyA 254 5.16e+00 1sg4A 260 5.31e+00 1p5dX 463 6.15e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1eyhA 144 6.52e+00 1eduA a.118.9.1 19214 1jjtA 228 6.54e+00 1a7tA d.157.1.1 63139 1qddA 144 6.93e+00 1qddA d.169.1.1 42324 1gen 218 7.21e+00 1gen b.66.1.1 27536 1h4pA 408 7.44e+00 c.1.8.3 90617 1ex2A 189 7.65e+00 1ex2A c.51.4.2 33225 1ivnA 190 8.20e+00 c.23.10.5 83719 1ja9A 274 8.22e+00 c.2.1.2 62817 1e4iA 447 8.46e+00 1e70M c.1.8.4 59225 1bdmA 327 9.31e+00 1bmdA c.2.1.5,d.162.1.1 30137,42104 1odzA 386 9.52e+00 c.1.8.3 86889 1mml 265 9.75e+00 1mml e.8.1.2 43015 1vkpA 383 9.92e+00 d.126.1.6 108686 1fmcA 255 9.95e+00 1cydA c.2.1.2 29856 1ox0A 430 9.96e+00 c.95.1.1,c.95.1.1 87495,87496 1d4aA 273 1.06e+01 1d4aA c.23.5.3 31219 1xqoA 256 1.08e+01 1b5qA 472 1.10e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1e6wA 260 1.12e+01 1e6wA c.2.1.2 59326 1gvnB 287 1.16e+01 c.37.1.21 76354 1dbxA 158 1.17e+01 1dbuA d.116.1.1 40928 1j24A 143 1.20e+01 c.52.1.20 84008 1f5nA 592 1.25e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1jae 471 1.28e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1yge 839 1.29e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1ad2 228 1.29e+01 1ad2 e.24.1.1 43353 1cg5A 141 1.31e+01 1abwA a.1.1.2 15406 2gk4A 232 1.39e+01 1h05A 146 1.42e+01 c.23.13.1 76433 1fjgE 162 1.43e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1ccwB 483 1.43e+01 1cb7B c.1.19.2 29646 1h09A 338 1.51e+01 b.109.1.1,c.1.8.8 83420,83421 1im5A 180 1.52e+01 c.33.1.3 66211 1e5rA 290 1.53e+01 1e5rA b.82.2.4 59276 1e5mA 416 1.59e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1nc5A 373 1.63e+01 a.102.1.6 85548 1hl2A 297 1.65e+01 c.1.10.1 83581 1dkuA 317 1.68e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1nar 290 1.70e+01 1nar c.1.8.5 28988 1e5kA 201 1.71e+01 1fr9A c.68.1.8 34578 1gqiA 708 1.71e+01 c.1.8.10,d.92.2.2 76279,76280 2cfuA 658 1.72e+01 1xd3A 230 1.78e+01 1ihgA 370 1.80e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1eny 268 1.80e+01 1eny c.2.1.2 29910 1tqjA 230 1.86e+01 c.1.2.2 107228 1g8kA 825 1.90e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1vmeA 410 1.98e+01 c.23.5.1,d.157.1.3 108893,108894 1a8y 367 1.98e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1e4mM 501 2.04e+01 1e70M c.1.8.4 59226 1po5A 476 2.05e+01 a.104.1.1 94963 1s9uA 207 2.08e+01 a.184.1.1 105390 1cvl 319 2.13e+01 1cvl c.69.1.18 34786 1f0kA 364 2.14e+01 1f0kA c.87.1.2 35465 1ks8A 433 2.14e+01 a.102.1.2 77519 1jl2A 156 2.15e+01 c.55.3.1 66822 1p4oA 322 2.18e+01 d.144.1.7 87775 1gox 370 2.21e+01 1gox c.1.4.1 28607 1jvbA 347 2.22e+01 b.35.1.2,c.2.1.1 77181,77182 1hc7A 477 2.24e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1ryoA 327 2.29e+01 c.94.1.2 98108 1y4wA 518 2.29e+01 1gegA 256 2.31e+01 1ybvA c.2.1.2 29888 1c7gA 456 2.36e+01 c.67.1.2 90415 1gsa 316 2.37e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1msk 331 2.37e+01 1msk d.173.1.1 42495 1q9uA 130 2.37e+01 d.129.7.1 96314 1rtqA 299 2.40e+01 c.56.5.4 97819 1vljA 407 2.45e+01 e.22.1.2 108832 1gvdA 52 2.45e+01 a.4.1.3 83338 1x9iA 302 2.46e+01 1mj4A 82 2.47e+01 d.120.1.1 79189 1lzlA 323 2.55e+01 c.69.1.2 78306 1oc7A 364 2.58e+01 c.6.1.1 86794 1g0cA 364 2.59e+01 7a3hA c.1.8.3 60165 1lqaA 346 2.62e+01 c.1.7.1 84674 1fs7A 485 2.62e+01 1qdbA a.138.1.3 19691 1v6sA 390 2.63e+01 c.86.1.1 100424 1fobA 334 2.64e+01 c.1.8.3 83255 1d8wA 426 2.78e+01 1de5A c.1.15.2 29394 1km4A 247 2.79e+01 c.1.2.3 72740 1hx0A 496 2.82e+01 b.71.1.1,c.1.8.1 61346,61347 1k07A 263 2.82e+01 d.157.1.1 77218 1dj0A 264 2.88e+01 1dj0A d.265.1.1 90337 1wddA 477 2.90e+01 1ktgA 138 2.91e+01 d.113.1.1 72972 1jmsA 381 2.96e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1snrA 341 2.97e+01 b.6.1.3,b.6.1.3 105823,105824 1g5bA 221 2.97e+01 1g5bA d.159.1.3 60261 1j8uA 325 2.98e+01 d.178.1.1 71611 1sqsA 242 2.99e+01 c.23.5.5 98968 1k0fA 277 3.02e+01 c.92.2.2 71974 1ht6A 405 3.10e+01 b.71.1.1,c.1.8.1 83629,83630 1oafA 261 3.18e+01 a.93.1.1 86734 1ls1A 295 3.26e+01 a.24.13.1,c.37.1.10 78170,78171 1ujpA 271 3.27e+01 c.1.2.4 99462 1ursA 402 3.27e+01 c.94.1.1 99833 1wmaA 276 3.28e+01 1jubA 311 3.28e+01 c.1.4.1 90908 1eyeA 280 3.40e+01 1aj2 c.1.21.1 29672 1ft5A 211 3.44e+01 1bvb a.138.1.3 19681 1hyvA 166 3.54e+01 1b9dA c.55.3.2 61424 1ag9A 175 3.58e+01 1rcf c.23.5.1 31178 1hd7A 318 3.59e+01 1bix d.151.1.1 41780 1h3nA 878 3.60e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1vdwA 254 3.64e+01 e.7.1.1 100569 1hruA 188 3.67e+01 1hruA d.115.1.1 40926 1b7yA 350 3.72e+01 1pysA d.104.1.1 40776 1e5dA 402 3.73e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1hyeA 313 3.75e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1dcs 311 3.75e+01 1dcs b.82.2.1 28124 1nvmA 345 3.79e+01 a.5.7.1,c.1.10.5 86249,86250 1vpjA 192 3.84e+01 1j93A 353 3.86e+01 c.1.22.1 66454 1t5bA 201 3.87e+01 c.23.5.3 106433 1t9hA 307 3.87e+01 1gz2A 142 3.87e+01 d.169.1.1 83392 1h16A 759 3.90e+01 c.7.1.1 76462 1pot 325 3.92e+01 1pot c.94.1.1 35807 1es9A 232 3.97e+01 1wab c.23.10.3 31340 1i6lA 328 3.99e+01 c.26.1.1 66041 1jz8A 1023 4.00e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1ui0A 205 4.06e+01 c.18.1.2 99411 1b7yB 785 4.12e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1k04A 162 4.18e+01 a.24.14.1 67904 1fp3A 402 4.20e+01 1fp3A a.102.1.3 18842 1o5kA 306 4.21e+01 c.1.10.1 92504 1k3yA 221 4.29e+01 a.45.1.1,c.47.1.5 77245,77246 1qnrA 344 4.29e+01 1qnoA c.1.8.3 28834 1h65A 270 4.32e+01 c.37.1.8 65640 1jk7A 323 4.37e+01 1auiA d.159.1.3 63144 1a6q 382 4.41e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1w0pA 781 4.41e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1cliA 345 4.44e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1j1nA 492 4.49e+01 c.94.1.1 83978 1edqA 540 4.49e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1f32A 149 4.53e+01 1f32A d.62.1.1 39539 1vkeA 133 4.55e+01 a.152.1.2 108650 1x9dA 538 4.61e+01 1f2tA 149 4.61e+01 1f2tA c.37.1.12 32373 1xm3A 264 4.63e+01 1o1yA 239 4.63e+01 c.23.16.1 86554 1o9gA 250 4.63e+01 c.66.1.29 86692 1io2A 213 4.64e+01 1ekeA c.55.3.1 62612 1e8gA 560 4.72e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1gtkA 313 4.72e+01 c.94.1.1,d.50.2.1 76346,76347 1g61A 228 4.75e+01 1g61A d.126.1.1 41126 1mixA 206 4.83e+01 a.11.2.1,b.55.1.5 79166,79167 1iy8A 267 4.86e+01 c.2.1.2 83774 1h1dA 221 4.86e+01 c.66.1.1 83452 1ad1A 266 4.94e+01 1aj2 c.1.21.1 29668 1vyrA 364 4.94e+01 c.1.4.1 108906 1mtyB 384 4.95e+01 1mtyB a.25.1.2 16740 1mwqA 101 4.98e+01 d.58.4.7 91481 1nogA 177 5.00e+01 a.25.2.2 85923 1itxA 419 5.07e+01 c.1.8.5,d.26.3.1 71425,71426 1wvfA 520 5.16e+01 1qtnA 164 5.25e+01 1pauA c.17.1.1 30999 1fehA 574 5.29e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1xjuA 163 5.34e+01 1qgvA 142 5.35e+01 1qgvA c.47.1.8 33056 1tqgA 105 5.40e+01 a.24.10.3 107224 1bqcA 302 5.41e+01 1bqcA c.1.8.3 28831 1gwyA 175 5.43e+01 b.97.1.1 83356 1c9kA 180 5.44e+01 1c9kB c.37.1.11 32363 2arcA 164 5.45e+01 2arcA b.82.4.1 28148 1rrmA 386 5.46e+01 e.22.1.2 105081 1i4wA 353 5.54e+01 c.66.1.24 66028 19hcA 292 5.58e+01 19hcA a.138.1.1 19668 1gk8A 475 5.58e+01 c.1.14.1,d.58.9.1 65234,65235 1uscA 178 5.59e+01 b.45.1.2 99860 1jznA 135 5.60e+01 d.169.1.1 84262 1f46A 140 5.64e+01 1f46A d.129.4.1 59643 1fpoA 171 5.64e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1j0hA 588 5.75e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1bg2 325 5.78e+01 1bg2 c.37.1.9 32189 1ju2A 536 5.84e+01 c.3.1.2,d.16.1.1 77169,77170 1qq9A 284 5.86e+01 1xjo c.56.5.4 33841 1jhdA 396 5.86e+01 b.122.1.3,c.26.1.5 66712,66713 1nlnA 204 5.90e+01 d.3.1.7 91962 1r5lA 262 6.04e+01 a.5.3.1,c.13.1.1 97099,97100 1gqnA 252 6.06e+01 c.1.10.1 90514 1y80A 210 6.10e+01 1azsA 220 6.12e+01 1azsA d.58.29.1 39416 1f6fA 199 6.14e+01 1f6fA a.26.1.1 16839 1ixmA 192 6.15e+01 1ixmA d.123.1.1 41114 1hnjA 317 6.15e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1d7uA 433 6.17e+01 2dkb c.67.1.4 34439 1fecA 490 6.21e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1gai 472 6.30e+01 1ayx a.102.1.1 18819 1ajsA 412 6.36e+01 1ajsA c.67.1.1 34276 1jnrA 643 6.40e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1b8aA 438 6.42e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1dk8A 147 6.49e+01 1agrE a.91.1.1 18548 1fi4A 416 6.49e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1kolA 398 6.55e+01 b.35.1.2,c.2.1.1 77474,77475 1b8oA 284 6.61e+01 1b8oA c.56.2.1 33762 1ufyA 122 6.69e+01 d.79.1.2 88489 1nszA 347 6.72e+01 b.30.5.4 80724 1hr6A 475 6.77e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1gxyA 226 6.81e+01 d.166.1.3 76380 1vggA 161 6.83e+01 1ed8A 449 7.04e+01 1b8jA c.76.1.1 34988 1oewA 329 7.08e+01 b.50.1.2 86924 1dxeA 256 7.12e+01 1dxeA c.1.12.5 29310 1c3pA 375 7.24e+01 1c3pA c.42.1.2 32606 1h6kA 757 7.29e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1dceB 331 7.30e+01 1dceB a.102.4.3 18872 1eljA 381 7.33e+01 4mbp c.94.1.1 35791 1jksA 294 7.49e+01 d.144.1.7 71710 1bia 321 7.51e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1d3vA 323 7.68e+01 1d3vA c.42.1.1 32559 1jtvA 327 7.70e+01 c.2.1.2 84230 1kv7A 488 7.72e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1jakA 512 7.72e+01 c.1.8.6,d.92.2.1 66472,66473 1bvoA 175 7.84e+01 1a3qA b.2.5.3 22457 1i27A 73 7.89e+01 1i27A a.4.5.30 61555 1e0cA 271 7.90e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1b63A 333 8.04e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1t9iA 163 8.04e+01 1ehyA 294 8.05e+01 1ehyA c.69.1.11 34693 1d3cA 686 8.06e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1v4vA 376 8.06e+01 c.87.1.3 100313 1eswA 500 8.08e+01 1cwyA c.1.8.1 59500 1gskA 513 8.08e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1o2dA 371 8.10e+01 e.22.1.2 86591 1qtwA 285 8.28e+01 1qumA c.1.15.1 29392 1gnxA 479 8.29e+01 c.1.8.4 76241 1v77A 212 8.36e+01 c.6.3.2 108402 1r45A 204 8.39e+01 1a7j 290 8.40e+01 1a7j c.37.1.6 31952 1n93X 375 8.43e+01 a.206.1.1 91707 1exqA 154 8.48e+01 1b9dA c.55.3.2 33646 1vhnA 318 8.54e+01 c.1.4.1 100693 16pk 415 8.57e+01 16pk c.86.1.1 35454 1ijbA 202 8.59e+01 c.62.1.1 71229 1e9rA 437 8.72e+01 c.37.1.11 64827 1f74A 293 8.77e+01 1nal3 c.1.10.1 29079 1fxxA 482 8.89e+01 1fxxA c.55.3.5 33726 1bco 327 8.90e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1aocA 175 8.93e+01 1aocA g.17.1.5 44817 1g57A 217 8.97e+01 1g57A d.115.1.2 60253