Best Alignments for T0289

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bcoA/T0289-2bcoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bcoA/T0289-2bcoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8174e-019.42e-04
1jt8A/T0289-1jt8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jt8A/T0289-1jt8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4652e+005.60e-02 b.40.4.5
1cv8/T0289-1cv8-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cv8/T0289-1cv8-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0275e+013.43e-05 1cv8 d.3.1.1
1rflA/T0289-1rflA-t2k-local-adpstyle1.a2m 1rflA/T0289-1rflA-t2k-local-adpstyle1.al 2.0552e+015.45e+00 c.37.1.8
1vjvA/T0289-1vjvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjvA/T0289-1vjvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2995e+012.44e-04 d.3.1.9
1mwmA/T0289-1mwmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mwmA/T0289-1mwmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5435e+011.70e+00 c.55.1.1
c.55.1.1
1te5A/T0289-1te5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1te5A/T0289-1te5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6242e+019.92e-05 d.153.1.1
1wruA/T0289-1wruA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wruA/T0289-1wruA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8971e+016.74e-03
1vhsA/T0289-1vhsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vhsA/T0289-1vhsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1108e+012.93e-01 d.108.1.1
1el6B/T0289-1el6B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1el6B/T0289-1el6B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6284e+012.16e-02 1el6B d.182.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001