# List of top-scoring protein chains for T0289.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rflA 172 1.44e+00 c.37.1.8 97384 2b43A 526 2.95e+00 1uqrA 154 7.18e+00 c.23.13.1 99779 1sh0A 510 7.58e+00 e.8.1.4 98876 4ubpA 101 9.89e+00 1ubpA d.8.1.1 37352 1ie7A 100 9.98e+00 1ubpA d.8.1.1 62313 2a72A 146 1.19e+01 2afrA 231 1.23e+01 1zagA 274 1.37e+01 1agdA b.1.1.2,d.19.1.1 20851,38315 1rqjA 299 1.40e+01 a.128.1.1 97744 1rqiA 300 1.40e+01 a.128.1.1 97742 1giqA 413 1.54e+01 d.166.1.1,d.166.1.1 76224,76225 1t7vA 278 1.94e+01 1tux 301 2.19e+01 1taxA c.1.8.3 28907 1ytkA 398 2.25e+01 1h0cA 392 2.49e+01 c.67.1.3 83424 1x5aA 107 2.51e+01 1i1wA 303 2.52e+01 c.1.8.3 76732 2bnjA 303 2.53e+01 1vbkA 307 2.94e+01 1k6aA 303 3.01e+01 c.1.8.3 72081 2fpfA 71 3.06e+01 1j04A 392 3.06e+01 c.67.1.3 90734 1ks8A 433 3.06e+01 a.102.1.2 77519 1h2hA 241 3.14e+01 d.81.1.3,c.2.1.3 70861,83058 2fpeA 62 3.19e+01 1j5pA 253 3.31e+01 d.81.1.3,c.2.1.3 71577,83092 1q3eA 207 3.38e+01 b.82.3.2 95669 1wwzA 159 3.44e+01 1k46A 136 3.55e+01 d.195.1.1 68125 1mqhA 263 3.69e+01 c.94.1.1 91397 1eoqA 96 3.70e+01 1d1dA a.28.3.1 16959 2ayuA 417 3.76e+01 1mb4A 370 3.88e+01 c.2.1.3,d.81.1.1 78908,78909 1hufA 140 3.92e+01 1hufA d.195.1.1 61272 2ftzA 284 4.10e+01 2anjA 263 4.16e+01 1nsqA 153 4.23e+01 1npk d.58.6.1 39135 1p1oA 263 4.47e+01 c.94.1.1 87699 2b8nA 429 4.47e+01 1mqdA 261 4.56e+01 c.94.1.1 85049 1m5dA 263 4.63e+01 c.94.1.1 78641 1mqiA 263 4.65e+01 c.94.1.1 91398 1lbcA 263 4.65e+01 c.94.1.1 73805 1lbbA 263 4.68e+01 c.94.1.1 73804 2forA 323 4.69e+01 1ejxA 100 4.77e+01 d.8.1.1 83182 1ojxA 263 4.81e+01 c.1.10.1 93164 1w8sA 263 4.91e+01 1w8rA 263 4.94e+01 1ftkA 279 5.01e+01 1gr2A c.94.1.1 35819 1p1wA 263 5.03e+01 c.94.1.1 87713 1z1vA 80 5.06e+01 2ljrA 244 5.19e+01 1ljrA a.45.1.1,c.47.1.5 17709,33003 1lb8A 263 5.20e+01 c.94.1.1 73800 1mk4A 157 5.32e+01 d.108.1.1 84979 1mvpA 124 5.36e+01 2rspB b.50.1.1 26775 1uqvA 85 5.50e+01 a.60.1.2 99798 1v30A 124 5.65e+01 1pv8A 330 5.70e+01 c.1.10.3 95155 1jt8A 102 5.92e+01 b.40.4.5 63279 1ta3B 303 6.03e+01 c.1.8.3 106732 1e51A 330 6.14e+01 1b4kA c.1.10.3 59254 2rspA 124 6.26e+01 2rspB b.50.1.1 26771 2fug6 181 6.27e+01 1idm 343 6.48e+01 1cnzA c.77.1.1 35035 1gtzA 156 6.54e+01 c.23.13.1 70539 1o9rA 162 6.56e+01 a.25.1.1 86706 1xaa 345 6.81e+01 1cnzA c.77.1.1 35033 1ipd 345 6.82e+01 1cnzA c.77.1.1 35038 1gc9A 345 6.89e+01 1cnzA c.77.1.1 35037 1g2uA 345 6.89e+01 1cnzA c.77.1.1 35036 1yabA 87 6.91e+01 1e6bA 221 6.92e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1walA 345 6.93e+01 1cnzA c.77.1.1 35041 1dr8A 344 7.00e+01 1cnzA c.77.1.1 35051 1osjA 345 7.00e+01 1cnzA c.77.1.1 35039 1dr0A 346 7.02e+01 1cnzA c.77.1.1 35045 1dpzA 349 7.03e+01 1cnzA c.77.1.1 35053 1gc8A 345 7.15e+01 1cnzA c.77.1.1 35042 1udzA 182 7.21e+01 b.51.1.1 99239 1wnyA 186 7.21e+01 2ai4A 119 7.22e+01 1m6eX 359 7.23e+01 c.66.1.35 91188 1wk8A 194 7.42e+01 1sj5A 164 7.45e+01 1gu1A 156 7.61e+01 c.23.13.1 70563 1yv1A 202 7.67e+01 1yuzA 202 7.70e+01 1o6aA 96 7.75e+01 b.139.1.1 92562 2bt4A 157 7.97e+01 4blcA 506 8.27e+01 1cf9A e.5.1.1 42775 1wggA 96 8.29e+01 1j5uA 136 8.40e+01 d.208.1.1 71584 1xad 345 8.46e+01 1cnzA c.77.1.1 35055 1xn5A 146 8.52e+01 1wv8A 73 8.57e+01 1ut9A 609 8.67e+01 a.102.1.2,b.1.18.2 99912,99913 1ic6A 279 8.68e+01 1gci c.41.1.1 62257 1rq5A 610 8.73e+01 a.102.1.2,b.1.18.2 97730,97731 1knqA 175 8.88e+01 c.37.1.17 72786