# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjvA 415 5.82e-01 d.3.1.9 108632 1fjgK 129 6.89e-01 1fjfK c.55.4.1 33733 1bf2 750 1.84e+00 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1gj7B 253 2.51e+00 1ee6A 197 3.17e+00 1ee6A b.80.1.1 28024 1c9oA 66 3.46e+00 1mjc b.40.4.5 25325 1kcqA 104 3.56e+00 d.109.1.1 68449 1g31A 111 4.29e+00 1g31A b.35.1.1 24656 1ro7A 259 5.37e+00 c.130.1.1 97667 1eu3A 210 5.48e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 1v6pA 62 5.73e+00 1g4iA 123 6.44e+00 1poa a.133.1.2 60241 1bm8 99 6.70e+00 1bm8 d.34.1.1 38528 1xttA 216 7.52e+00 1hn4A 131 8.07e+00 a.133.1.2 65893 1gci 269 8.25e+00 1gci c.41.1.1 32503 1jsdA 319 8.34e+00 b.19.1.2 63258 1rqpA 299 8.93e+00 b.141.1.1,c.132.1.1 97754,97755 1ic6A 279 9.49e+00 1gci c.41.1.1 62257 1vdwA 254 9.59e+00 e.7.1.1 100569 1i8kA 107 9.59e+00 b.1.1.1 71130 1d2tA 231 1.03e+01 1d2tA a.111.1.1 19052 1a8y 367 1.05e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1ev7A 317 1.10e+01 1ev7B c.52.1.9 33315 1c8uA 285 1.15e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1inlA 296 1.19e+01 c.66.1.17 66220 1o54A 277 1.19e+01 c.66.1.13 92482 1vhsA 175 1.23e+01 d.108.1.1 100698 1hpi 71 1.26e+01 1ckuA g.35.1.1 44995 1ikpA 613 1.28e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2mcm 112 1.35e+01 2mcm b.1.7.1 22207 1mfgA 95 1.48e+01 b.36.1.1 79043 1a3aA 148 1.67e+01 1a3aA d.112.1.1 40917 1o7nA 449 1.69e+01 b.33.1.2,d.129.3.3 81162,81163 1qh5A 260 1.87e+01 1qh5A d.157.1.2 42057 1ddjA 247 1.90e+01 5ptp b.47.1.2 26362 1aiw 62 1.93e+01 1aiw b.72.2.1 27808 1lxjA 104 1.94e+01 d.58.48.1 84736 4ubpA 101 2.00e+01 1ubpA d.8.1.1 37352 1dkuA 317 2.01e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1s5aA 150 2.02e+01 d.17.4.10 98525 1ijaA 148 2.04e+01 1ijaA b.100.1.1 62484 1n62C 288 2.04e+01 d.87.2.1,d.145.1.3 80094,80095 1agqA 135 2.06e+01 1agqA g.17.1.2 44789 1vr9A 213 2.11e+01 1b7yA 350 2.13e+01 1pysA d.104.1.1 40776 1el6A 219 2.32e+01 1el6B d.182.1.1 42606 1rm6A 769 2.38e+01 1ahsA 126 2.41e+01 1ahsA b.19.1.1 23794 1wwzA 159 2.42e+01 1f53A 84 2.45e+01 1f53A b.11.1.4 23632 1snrA 341 2.54e+01 b.6.1.3,b.6.1.3 105823,105824 1gkpA 458 2.60e+01 b.92.1.3,c.1.9.6 70231,70232 1g4wR 383 2.61e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1jovA 270 2.63e+01 b.30.5.7 84192 1ei5A 520 2.76e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1v5vA 401 2.79e+01 1eaxA 241 2.97e+01 b.47.1.2 64889 1h2wA 710 3.04e+01 b.69.7.1,c.69.1.4 76596,76597 1udzA 182 3.10e+01 b.51.1.1 99239 1gcqC 70 3.12e+01 1gcpA b.34.2.1 60436 1eaiC 61 3.17e+01 1eaiC g.22.1.1 44894 1oxxK 353 3.23e+01 b.40.6.3,c.37.1.12 93715,93716 1o1yA 239 3.23e+01 c.23.16.1 86554 1v30A 124 3.25e+01 1n7oA 721 3.27e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1jb7B 260 3.33e+01 1otcB b.40.4.3 62839 1nq7A 244 3.34e+01 a.123.1.1 92047 1a8q 274 3.36e+01 1brt c.69.1.12 34702 1hh8A 213 3.37e+01 1e96B a.118.8.1 61042 1t2wA 145 3.42e+01 b.100.1.1 106289 1rcqA 357 3.45e+01 b.49.2.2,c.1.6.1 104882,104883 1vp6A 138 3.46e+01 1vbiA 344 3.47e+01 1sz7A 200 3.49e+01 1oruA 195 3.51e+01 b.58.1.2 93464 1gntA 553 3.55e+01 e.26.1.1 70290 1kqfC 217 3.58e+01 f.21.1.1 72874 1b12A 248 3.61e+01 1b12A b.87.1.2 28388 1bueA 265 3.64e+01 1btl e.3.1.1 42727 1p1mA 406 3.65e+01 b.92.1.4,c.1.9.9 87696,87697 1ej6B 1275 3.71e+01 i.7.1.1 45968 1qwrA 319 3.77e+01 b.82.1.3 96491 1wkrA 340 4.00e+01 b.50.1.2 109395 1fepA 724 4.04e+01 1fepA f.4.3.3 43808 1ts9A 102 4.05e+01 1v33A 366 4.10e+01 d.264.1.1 100278 1mc2A 122 4.11e+01 a.133.1.2 74622 1jmxA 494 4.20e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1llfA 534 4.22e+01 c.69.1.17 78094 1dekA 241 4.29e+01 1dekA c.37.1.1 31842 1u9cA 224 4.39e+01 1ir21 140 4.42e+01 1hq0A 295 4.52e+01 1hzgA d.194.1.1 61122 1d7qA 143 4.54e+01 1d7qA b.40.4.5 25331 1fjgP 88 4.62e+01 1emwA d.27.1.1 38444 1ubkL 534 4.67e+01 e.18.1.1 88422 1dmuA 299 4.73e+01 1dmuA c.52.1.4 33294 1gy7A 125 4.81e+01 d.17.4.2 70738 1jigA 146 4.83e+01 a.25.1.1 71685 1h6uA 308 4.88e+01 b.1.18.15,c.10.2.1 65688,65689 1h8eH 146 4.96e+01 1e79H b.93.1.1 60757 1kqrA 179 5.06e+01 b.29.1.14 72886 1ihjA 98 5.07e+01 1pdr b.36.1.1 62382 1cl1A 395 5.11e+01 1cl2A c.67.1.3 34395 1aisA 182 5.23e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1iq6A 134 5.31e+01 d.38.1.4 76755 1ooyA 481 5.32e+01 c.124.1.3,c.124.1.2 93388,93389 1ro0A 216 5.39e+01 d.264.1.2 97664 1g38A 393 5.40e+01 2admA c.66.1.27 60235 1n08A 163 5.48e+01 b.43.5.1 79730 1jsmA 325 5.60e+01 b.19.1.2 63264 1fjrA 195 5.61e+01 1fjrA b.102.1.1 59855 1pp0A 199 5.62e+01 d.103.1.1 104211 1epxA 370 5.69e+01 1fbaA c.1.10.1 29150 1x9iA 302 5.70e+01 1e30A 155 5.75e+01 1rcy b.6.1.1 23016 1dgwX 79 5.77e+01 1caxB b.82.1.2 28091 1t92A 116 5.79e+01 1bqsA 209 6.10e+01 1bqsA b.1.1.4,b.1.1.4 21704,21705 1jyhA 157 6.25e+01 d.60.1.3 71956 1mba 147 6.31e+01 2fal a.1.1.2 15149 1e6yA 569 6.50e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1vcaA 202 6.55e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1cuoA 129 6.60e+01 1nwpA b.6.1.1 23015 1tyjA 170 6.69e+01 1f1xA 322 6.71e+01 d.32.1.3,d.32.1.3 83208,83209 1ogoX 574 6.75e+01 b.133.1.1,b.80.1.10 92925,92926 1jofA 365 6.89e+01 b.69.10.1 71775 1e85A 127 6.95e+01 1bbhA a.24.3.2 16549 1bywA 110 6.98e+01 1bywA d.110.3.6 40912 1ruwA 69 7.00e+01 1df7A 159 7.12e+01 3dfr c.71.1.1 34885 1ahl 49 7.16e+01 1ahl g.9.1.1 44601 1senA 164 7.26e+01 c.47.1.1 105465 2fneA 117 7.34e+01 1gpr 162 7.35e+01 1gpr b.84.3.1 28267 1go3E 187 7.71e+01 b.40.4.5,d.230.1.1 83054,83055 1yx1A 264 7.73e+01 1z2nX 324 7.89e+01 2cfuA 658 7.97e+01 1j1qA 261 8.05e+01 d.165.1.1 90768 1h70A 255 8.05e+01 1h70A d.126.1.3 60711 2trxA 108 8.16e+01 1thx c.47.1.1 32719 1yg9A 330 8.21e+01 1h7cA 108 8.30e+01 a.7.5.1 70914 1qsaA 618 8.32e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1u8vA 490 8.32e+01 1hxvA 113 8.33e+01 d.26.1.1 71089 1iro 54 8.36e+01 1rb9 g.41.5.1 45223 1yb3A 175 8.36e+01 1euwA 152 8.40e+01 1dupA b.85.4.1 28349 1tuaA 191 8.41e+01 d.51.1.1,d.51.1.1 107321,107322 1dwkA 156 8.54e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1cruA 454 8.54e+01 1c9uA b.68.2.1 27617 1fyhB 229 8.56e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1g4mA 393 8.57e+01 b.1.18.11,b.1.18.11 65143,65144 1bia 321 8.72e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1dcoA 104 8.86e+01 1dcpA d.74.1.1 39680 1eyvA 156 8.90e+01 1eyvA a.79.1.1 18446 1lv7A 257 8.94e+01 c.37.1.20 78232 1ad2 228 8.97e+01 1ad2 e.24.1.1 43353