# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 4ubpA 101 5.73e-01 1ubpA d.8.1.1 37352 1dcoA 104 3.12e+00 1dcpA d.74.1.1 39680 1udzA 182 3.95e+00 b.51.1.1 99239 1ejxA 100 5.19e+00 d.8.1.1 83182 1hpi 71 5.45e+00 1ckuA g.35.1.1 44995 1mk4A 157 5.91e+00 d.108.1.1 84979 1ic6A 279 7.18e+00 1gci c.41.1.1 62257 1edg 380 7.62e+00 1edg c.1.8.3 28807 1ei5A 520 7.75e+00 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1wkrA 340 8.00e+00 b.50.1.2 109395 1whi 122 8.35e+00 1whi b.39.1.1 24810 1ev7A 317 8.44e+00 1ev7B c.52.1.9 33315 1fjgK 129 9.32e+00 1fjfK c.55.4.1 33733 1o6sB 105 1.08e+01 b.1.6.1 81096 1giqA 413 1.11e+01 d.166.1.1,d.166.1.1 76224,76225 1vjvA 415 1.26e+01 d.3.1.9 108632 1hfoA 113 1.28e+01 d.80.1.3 61006 1lv7A 257 1.35e+01 c.37.1.20 78232 1hufA 140 1.39e+01 1hufA d.195.1.1 61272 1xjuA 163 1.50e+01 2g7jA 124 1.60e+01 1gtzA 156 1.97e+01 c.23.13.1 70539 1aiw 62 2.01e+01 1aiw b.72.2.1 27808 1ikpA 613 2.42e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1i1wA 303 2.44e+01 c.1.8.3 76732 1o54A 277 2.65e+01 c.66.1.13 92482 1jsdA 319 2.91e+01 b.19.1.2 63258 1d4tA 104 2.93e+01 1d4tA d.93.1.1 40537 1f0lA 535 3.06e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1vp6A 138 3.08e+01 1d4aA 273 3.11e+01 1d4aA c.23.5.3 31219 1vhsA 175 3.46e+01 d.108.1.1 100698 1gcqC 70 3.47e+01 1gcpA b.34.2.1 60436 1bcpD 110 3.75e+01 1bcpD b.40.2.1 25132 1ig8A 486 3.78e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1dkuA 317 3.82e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1bec 238 3.87e+01 1bec b.1.1.1,b.1.1.2 20627,21561 1k3yA 221 4.07e+01 a.45.1.1,c.47.1.5 77245,77246 1n7oA 721 4.10e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1fs5A 266 4.27e+01 c.124.1.1 65044 1v30A 124 4.31e+01 1j5pA 253 4.37e+01 d.81.1.3,c.2.1.3 71577,83092 1jsmA 325 4.38e+01 b.19.1.2 63264 1fjnA 39 4.63e+01 1fjnA g.3.7.3 44171 1d0dA 60 4.69e+01 1kigI g.8.1.2 44566 1iwlA 182 4.69e+01 b.125.1.1 83757 1cv8 174 4.77e+01 1cv8 d.3.1.1 37089 1e6bA 221 4.81e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1ks8A 433 4.83e+01 a.102.1.2 77519 1eu3A 210 4.85e+01 1an8 b.40.2.2,d.15.6.1 25206,37795 1cpt 412 5.12e+01 1cpt a.104.1.1 18968 1dxy 333 5.14e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1hkyA 86 5.26e+01 g.10.1.3 76714 1j79A 347 5.27e+01 1j79A c.1.9.4 62675 1vl2A 421 5.38e+01 c.26.2.1,d.210.1.1 108708,108709 1fm0D 81 5.63e+01 1fmaD d.15.3.1 37642 1q1fA 151 5.77e+01 a.1.1.2 104476 1ihjA 98 5.78e+01 1pdr b.36.1.1 62382 1gpmA 525 5.96e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1e9rA 437 5.99e+01 c.37.1.11 64827 1h72C 296 5.99e+01 d.14.1.5,d.58.26.1 60712,60713 1se8A 301 6.05e+01 b.40.4.3 105448 1xe7A 203 6.15e+01 1vcc 77 6.26e+01 1vcc d.121.1.1 41092 1g4iA 123 6.40e+01 1poa a.133.1.2 60241 1mhnA 59 6.40e+01 b.34.9.1 84964 1hpcA 131 6.48e+01 1htp b.84.1.1 28221 1d2vC 466 6.49e+01 1mhlC 1j7xA 302 6.86e+01 c.14.1.2 66425 1dcfA 136 6.98e+01 1dcfA c.23.1.2 31124 1gkpA 458 7.08e+01 b.92.1.3,c.1.9.6 70231,70232 1gttA 429 7.16e+01 d.177.1.1,d.177.1.1 70529,70530 1l9xA 315 7.18e+01 c.23.16.1 73762 3vub 101 7.21e+01 3vub b.34.6.1 24613 1bvyF 191 7.22e+01 1bvyF c.23.5.1 31207 1aoy 78 7.37e+01 1aoy a.4.5.3 16087 1icpA 376 7.54e+01 1oyc c.1.4.1 62270 1ixkA 315 7.63e+01 c.66.1.38 90716 1iv3A 152 7.65e+01 d.79.5.1 76828 1ro7A 259 7.66e+01 c.130.1.1 97667 1fnnA 389 7.68e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1gj7B 253 7.90e+01 1iioA 84 7.91e+01 a.39.4.1 66150 1fgkA 310 7.95e+01 1fgkA d.144.1.7 41693 1yb3A 175 8.04e+01 1gy7A 125 8.06e+01 d.17.4.2 70738 1bm8 99 8.09e+01 1bm8 d.34.1.1 38528 1v37A 177 8.15e+01 1hyhA 309 8.22e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1pg4A 652 8.32e+01 e.23.1.1 88067 1m4iA 181 8.38e+01 d.108.1.1 74457 1nykA 165 8.58e+01 b.33.1.1 86408 1tyv 542 8.59e+01 1tyv b.80.1.6 28038 1g31A 111 8.64e+01 1g31A b.35.1.1 24656 1r6dA 337 8.80e+01 c.2.1.2 97148 1mba 147 8.81e+01 2fal a.1.1.2 15149 1qmvA 197 8.87e+01 1qq2A c.47.1.10 33066