# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wnyA 186 5.44e-01 1zk7A 467 1.14e+00 1ta8A 332 1.79e+00 1pieA 419 1.93e+00 d.14.1.5,d.58.26.7 94706,94707 1hqsA 423 3.02e+00 1iso c.77.1.1 61154 1d2tA 231 3.20e+00 1d2tA a.111.1.1 19052 1ea7A 310 3.47e+00 c.41.1.1 70086 1kblA 873 3.86e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1u69A 163 4.36e+00 d.32.1.7 107699 1n4kA 381 4.42e+00 a.118.22.1,b.42.6.1 79992,79993 1rg9A 383 4.56e+00 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1w0dA 337 4.71e+00 1ex0A 731 5.12e+00 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2f2hA 773 6.36e+00 1nq7A 244 6.56e+00 a.123.1.1 92047 1hyoA 421 6.72e+00 1qcnA b.34.8.1,d.177.1.1 59001,59002 2cvzA 289 7.92e+00 1xwvA 129 8.12e+00 2b59B 172 8.94e+00 1xipA 388 9.02e+00 2a2kA 175 9.08e+00 1gc0A 398 9.24e+00 c.67.1.3 70168 2gd9A 189 9.40e+00 1ftrA 296 9.43e+00 1ftrA d.58.33.1,d.58.33.1 39485,39486 1d7uA 433 9.54e+00 2dkb c.67.1.4 34439 1d4xG 126 1.01e+01 1d0nA d.109.1.1 59109 1nnfA 309 1.04e+01 c.94.1.1 85903 1xdwA 331 1.07e+01 1ecfA 504 1.10e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1e4cP 215 1.12e+01 2fua c.74.1.1 34969 1v25A 541 1.14e+01 e.23.1.1 108275 1or0B 528 1.16e+01 1pixA 587 1.21e+01 c.14.1.4 94708 1wlsA 328 1.31e+01 1jakA 512 1.32e+01 c.1.8.6,d.92.2.1 66472,66473 1a1x 108 1.33e+01 1a1x b.63.1.1 27514 2eu9A 355 1.33e+01 2gl5A 410 1.34e+01 1b65A 375 1.48e+01 1b65A d.154.1.1 42020 1pzxA 289 1.50e+01 c.119.1.1 95484 2gjgA 248 1.52e+01 1zxmA 400 1.53e+01 1gppA 237 1.56e+01 b.86.1.2 76262 2d0oA 610 1.56e+01 2b8nA 429 1.58e+01 1aisA 182 1.65e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 2ck3A 510 1.68e+01 1u4gA 301 1.83e+01 d.92.1.2 107670 1vhsA 175 1.95e+01 d.108.1.1 100698 1zybA 232 1.96e+01 1j1lA 290 1.97e+01 b.82.1.12 90766 1ej6B 1275 1.97e+01 i.7.1.1 45968 1lml 478 1.99e+01 1lml d.92.1.3 40295 2ganA 190 2.05e+01 2b34A 199 2.08e+01 2furA 209 2.19e+01 1mvfA 135 2.21e+01 b.1.1.1 85141 1j7gA 144 2.32e+01 c.110.1.1 84130 1ne7A 289 2.41e+01 c.124.1.1 91833 1kqfB 294 2.47e+01 d.58.1.5,f.23.22.1 75900,75901 1nqkA 381 2.50e+01 c.1.16.4 92050 1obbA 480 2.54e+01 c.2.1.5,d.162.1.2 86760,86761 1j09A 468 2.59e+01 a.97.1.1,c.26.1.1 77025,77026 1ceo 343 2.62e+01 1ceo c.1.8.3 28808 2gvkA 317 2.72e+01 1gycA 499 2.77e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1txnA 328 2.82e+01 2d0iA 333 2.82e+01 1ty0A 211 2.88e+01 b.40.2.2,d.15.6.1 107440,107441 1xc1A 309 2.93e+01 c.94.1.1 109543 1cnzA 363 3.01e+01 1cnzA c.77.1.1 35061 1zcdA 388 3.04e+01 1qhxA 178 3.06e+01 1qhsA c.37.1.3 31936 1ikpA 613 3.11e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1se8A 301 3.14e+01 b.40.4.3 105448 2amdA 311 3.15e+01 2g58A 121 3.22e+01 2fymA 431 3.25e+01 1l5oA 356 3.28e+01 c.39.1.1 77711 1jr7A 311 3.28e+01 b.82.2.3 63255 1t1gA 364 3.32e+01 c.41.1.2 106246 1uufA 369 3.33e+01 b.35.1.2,c.2.1.1 100006,100007 1b0uA 262 3.34e+01 1b0uA c.37.1.12 32370 2bogX 286 3.36e+01 1lf6A 684 3.39e+01 a.102.1.5,b.30.5.5 77918,77919 1agjA 242 3.46e+01 1agjA b.47.1.1 25827 1mqoA 227 3.49e+01 d.157.1.1 103846 3vub 101 3.49e+01 3vub b.34.6.1 24613 1ppjA 446 3.52e+01 d.185.1.1,d.185.1.1 104252,104253 1cq3A 233 3.57e+01 1cq3A b.27.1.1 23923 1vgjA 184 3.59e+01 2biiA 424 3.60e+01 1n35A 1267 3.66e+01 e.8.1.4 79935 1rz2A 254 3.67e+01 b.100.1.1 105130 1tyv 542 3.68e+01 1tyv b.80.1.6 28038 1vjlA 164 3.68e+01 d.257.1.1 100822 1u8fO 335 3.72e+01 1who 96 3.79e+01 1who b.7.3.1 23215 1vplA 256 3.82e+01 1jdw 423 3.89e+01 1jdw d.126.1.2 41129 1vjpA 394 3.97e+01 c.2.1.3,d.81.1.3 100828,100829 2fsrA 195 4.04e+01 1c8uA 285 4.04e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1bu8A 452 4.19e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1ulkA 126 4.24e+01 g.3.1.1,g.3.1.1,g.3.1.1 99559,99560,99561 1jndA 420 4.28e+01 c.1.8.5,d.26.3.1 71757,71758 1m3sA 186 4.32e+01 c.80.1.3 78573 1nr0A 611 4.34e+01 b.69.4.1,b.69.4.1 86078,86079 1lu4A 136 4.38e+01 c.47.1.10 91124 1evyA 366 4.46e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1fcdA 401 4.49e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1rypL 212 4.50e+01 d.153.1.4 41880 3prn 289 4.53e+01 3prn f.4.3.1 43761 1w1oA 534 4.54e+01 d.58.32.4,d.145.1.1 109071,109072 1ntyA 311 4.55e+01 a.87.1.1,b.55.1.1 103873,103874 1cjaA 342 4.55e+01 1cjaA d.144.1.3 41708 2c1vA 338 4.57e+01 1wf3A 301 4.59e+01 2ceyA 306 4.63e+01 1dm5A 315 4.63e+01 1avc a.65.1.1 18186 1si6X 282 4.77e+01 1y791 680 4.79e+01 1gqiA 708 4.81e+01 c.1.8.10,d.92.2.2 76279,76280 2fomB 185 4.82e+01 1e0tA 470 4.85e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2av4A 162 4.85e+01 1l9kA 305 4.90e+01 c.66.1.25 84569 1itvA 195 4.98e+01 b.66.1.1 76791 1ghpA 258 4.99e+01 1btl e.3.1.1 60520 1fukA 165 5.02e+01 1fukA c.37.1.19 32409 1u8vA 490 5.09e+01 1nf9A 207 5.13e+01 c.33.1.3 85631 1gox 370 5.14e+01 1gox c.1.4.1 28607 1atg 231 5.17e+01 1atg c.94.1.1 35834 1hbnB 442 5.18e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1n4wA 504 5.29e+01 c.3.1.2,d.16.1.1 91676,91677 1d2oA 187 5.29e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1m65A 245 5.35e+01 c.6.3.1 84847 1f6yA 262 5.48e+01 1f6yA c.1.21.2 29673 1wdyA 285 5.59e+01 2btvA 901 5.76e+01 2btvA e.28.1.1 43376 1h8eA 510 5.77e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1qf5A 431 5.79e+01 1adeA c.37.1.10 32212 1te5A 257 5.84e+01 d.153.1.1 106795 1lvmA 229 5.99e+01 b.47.1.3 78243 1eu1A 780 6.03e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1mwmA 320 6.04e+01 c.55.1.1,c.55.1.1 79580,79581 1zgdA 312 6.05e+01 1djrD 103 6.07e+01 3chbD b.40.2.1 24865 1ni4A 365 6.09e+01 c.36.1.11 85728 2ae5B 528 6.09e+01 1l5aA 436 6.20e+01 c.43.1.2,c.43.1.2 75923,75924 1wd7A 261 6.20e+01 1qjpA 171 6.21e+01 1bxwA f.4.1.1 43742 1cvrA 435 6.40e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1idk 359 6.40e+01 1qcxA b.80.1.2 28025 1p32A 209 6.45e+01 1p32A d.25.1.1 38379 2a1fA 247 6.45e+01 1vi4A 174 6.50e+01 c.8.7.1 100731 1wekA 217 6.53e+01 1jmuB 666 6.58e+01 2absA 383 6.61e+01 1s6lA 212 6.64e+01 1wz9A 375 6.72e+01 2f01A 127 6.75e+01 1u3dA 509 6.87e+01 a.99.1.1,c.28.1.1 107638,107639 1tdhA 364 6.94e+01 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 1whsA 255 7.20e+01 1ivyA c.69.1.5 34649 1lehA 364 7.21e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1lam 484 7.21e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1j6wA 175 7.24e+01 1j98A d.185.1.2 62663 2a2nA 176 7.30e+01 3chbD 104 7.36e+01 3chbD b.40.2.1 24970 1wwzA 159 7.51e+01 1ec7A 446 7.60e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 2az4A 429 7.62e+01 1p4kA 295 7.63e+01 d.153.1.5 87772 1o0xA 262 7.70e+01 d.127.1.1 80755 1e4mM 501 7.81e+01 1e70M c.1.8.4 59226 1d8wA 426 7.86e+01 1de5A c.1.15.2 29394 1xf1A 926 7.86e+01 1wsrA 375 7.91e+01 1div 149 7.96e+01 1div d.99.1.1,d.100.1.1 40692,40693 2fdiA 211 8.01e+01 1luqA 127 8.01e+01 b.61.1.1 91128 1k7iA 479 8.02e+01 b.80.7.1,d.92.1.6 77281,77282 2ai4A 119 8.07e+01 1qysA 106 8.08e+01 k.41.1.1 96603 1x0rA 249 8.08e+01 2a67A 167 8.15e+01 1lldA 319 8.16e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 2ff4A 388 8.19e+01 1twdA 256 8.25e+01 c.1.30.1 107397 2fpeA 62 8.37e+01 1bif 469 8.44e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1o6aA 96 8.70e+01 b.139.1.1 92562 1z8gA 372 8.75e+01 1xkpC 143 8.76e+01 1twuA 139 8.77e+01 d.32.1.8 107413 1cl8A 276 8.85e+01 1ckqA c.52.1.1 33230 2b99A 156 8.94e+01