# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjvA 415 6.16e-01 d.3.1.9 108632 1eu3A 210 1.47e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 1fjgK 129 2.10e+00 1fjfK c.55.4.1 33733 1ee6A 197 2.13e+00 1ee6A b.80.1.1 28024 1n62C 288 3.09e+00 d.87.2.1,d.145.1.3 80094,80095 1jsdA 319 3.09e+00 b.19.1.2 63258 1c8uA 285 3.64e+00 1c8uA d.38.1.3,d.38.1.3 38547,38548 1dkuA 317 3.86e+00 1dkuA c.61.1.2,c.61.1.2 34118,34119 1hx0A 496 3.89e+00 b.71.1.1,c.1.8.1 61346,61347 1rqpA 299 4.10e+00 b.141.1.1,c.132.1.1 97754,97755 1yb3A 175 5.17e+00 1ikpA 613 5.69e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1gj7B 253 6.16e+00 1hpi 71 6.32e+00 1ckuA g.35.1.1 44995 1o7nA 449 8.50e+00 b.33.1.2,d.129.3.3 81162,81163 1vhsA 175 8.60e+00 d.108.1.1 100698 1g94A 448 8.68e+00 b.71.1.1,c.1.8.1 65169,65170 1ro7A 259 9.28e+00 c.130.1.1 97667 1rm6A 769 1.03e+01 1vp6A 138 1.08e+01 1ic6A 279 1.10e+01 1gci c.41.1.1 62257 1ei5A 520 1.21e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1jsmA 325 1.27e+01 b.19.1.2 63264 1wwzA 159 1.31e+01 1n7oA 721 1.32e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1d4tA 104 1.32e+01 1d4tA d.93.1.1 40537 1i8kA 107 1.36e+01 b.1.1.1 71130 1jovA 270 1.69e+01 b.30.5.7 84192 1ks8A 433 1.83e+01 a.102.1.2 77519 1v33A 366 1.86e+01 d.264.1.1 100278 1h8eH 146 1.90e+01 1e79H b.93.1.1 60757 1ahsA 126 1.92e+01 1ahsA b.19.1.1 23794 1agqA 135 2.01e+01 1agqA g.17.1.2 44789 1v6pA 62 2.05e+01 1n08A 163 2.06e+01 b.43.5.1 79730 1inlA 296 2.15e+01 c.66.1.17 66220 1hh8A 213 2.15e+01 1e96B a.118.8.1 61042 1k7iA 479 2.18e+01 b.80.7.1,d.92.1.6 77281,77282 1jb7B 260 2.30e+01 1otcB b.40.4.3 62839 1g4wR 383 2.33e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1dcoA 104 2.45e+01 1dcpA d.74.1.1 39680 1e6bA 221 2.55e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1gy7A 125 2.58e+01 d.17.4.2 70738 1bf2 750 2.68e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1aiw 62 2.69e+01 1aiw b.72.2.1 27808 1gkpA 458 2.77e+01 b.92.1.3,c.1.9.6 70231,70232 1d2tA 231 2.83e+01 1d2tA a.111.1.1 19052 1d0dA 60 2.88e+01 1kigI g.8.1.2 44566 1umgA 362 3.00e+01 d.280.1.1 107956 1bm8 99 3.16e+01 1bm8 d.34.1.1 38528 1a8q 274 3.18e+01 1brt c.69.1.12 34702 1oxxK 353 3.20e+01 b.40.6.3,c.37.1.12 93715,93716 1c9oA 66 3.24e+01 1mjc b.40.4.5 25325 1fepA 724 3.25e+01 1fepA f.4.3.3 43808 1kolA 398 3.37e+01 b.35.1.2,c.2.1.1 77474,77475 1wkrA 340 3.40e+01 b.50.1.2 109395 1o1yA 239 3.43e+01 c.23.16.1 86554 1xttA 216 3.44e+01 1el6A 219 3.44e+01 1el6B d.182.1.1 42606 4ubpA 101 3.46e+01 1ubpA d.8.1.1 37352 1ev7A 317 3.46e+01 1ev7B c.52.1.9 33315 1xdzA 240 3.47e+01 1f06A 320 3.56e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1a8y 367 3.63e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1brwA 433 3.71e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1go3E 187 3.78e+01 b.40.4.5,d.230.1.1 83054,83055 1ta8A 332 4.08e+01 2evbA 74 4.09e+01 1ihjA 98 4.14e+01 1pdr b.36.1.1 62382 1im3D 95 4.14e+01 1im3D b.1.18.5 62568 1e9gA 286 4.17e+01 1wgjA b.40.5.1 59393 1gtzA 156 4.22e+01 c.23.13.1 70539 1y4wA 518 4.23e+01 1jb0A 755 4.35e+01 1jb0A f.29.1.1 62820 1sluA 142 4.44e+01 1sluA b.16.1.1 23685 1et9A 204 4.51e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1jyhA 157 4.53e+01 d.60.1.3 71956 1o6sB 105 4.53e+01 b.1.6.1 81096 1f53A 84 4.59e+01 1f53A b.11.1.4 23632 1o54A 277 4.66e+01 c.66.1.13 92482 1i7nA 309 4.68e+01 c.30.1.5,d.142.1.3 83681,83682 1qwrA 319 4.74e+01 b.82.1.3 96491 1g31A 111 4.96e+01 1g31A b.35.1.1 24656 1geeA 261 5.05e+01 c.2.1.2 90509 1lniA 96 5.07e+01 d.1.1.2 74046 1mfgA 95 5.14e+01 b.36.1.1 79043 1kqfC 217 5.15e+01 f.21.1.1 72874 2mcm 112 5.29e+01 2mcm b.1.7.1 22207 1epxA 370 5.33e+01 1fbaA c.1.10.1 29150 1pp0A 199 5.33e+01 d.103.1.1 104211 1eaxA 241 5.55e+01 b.47.1.2 64889 1t92A 116 5.78e+01 1xg0A 76 5.79e+01 1gz2A 142 5.85e+01 d.169.1.1 83392 1avaC 181 5.85e+01 1avaC b.42.4.1 25604 1g4iA 123 5.91e+01 1poa a.133.1.2 60241 1lb6A 160 5.92e+01 b.8.1.1 73798 1qjpA 171 5.97e+01 1bxwA f.4.1.1 43742 1udzA 182 6.24e+01 b.51.1.1 99239 1e0nA 27 6.47e+01 b.72.1.1 27807 1g9oA 91 6.57e+01 1pdr b.36.1.1 60400 1g4mA 393 6.65e+01 b.1.18.11,b.1.18.11 65143,65144 1kcqA 104 6.65e+01 d.109.1.1 68449 2blnA 305 6.66e+01 1tovA 98 6.73e+01 b.34.10.1 107179 1fxxA 482 6.91e+01 1fxxA c.55.3.5 33726 1bia 321 7.09e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1ijvA 36 7.16e+01 g.9.1.1 66169 1fjgP 88 7.41e+01 1emwA d.27.1.1 38444 1fmhA 33 7.51e+01 1fmhB k.6.1.1 46409 1hkyA 86 7.57e+01 g.10.1.3 76714 1icpA 376 7.57e+01 1oyc c.1.4.1 62270 1j1tA 233 7.64e+01 b.29.1.18 90771 1euwA 152 7.73e+01 1dupA b.85.4.1 28349 1xvqA 175 7.75e+01 1vjoA 393 7.94e+01 c.67.1.3 100827 1kqrA 179 7.95e+01 b.29.1.14 72886 1ad2 228 8.00e+01 1ad2 e.24.1.1 43353 3vub 101 8.00e+01 3vub b.34.6.1 24613 1jofA 365 8.22e+01 b.69.10.1 71775 1i1wA 303 8.31e+01 c.1.8.3 76732 2fneA 117 8.31e+01 1gpiA 431 8.34e+01 b.29.1.10 65450 1aisA 182 8.39e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1x9iA 302 8.43e+01 1s29A 92 8.45e+01 a.4.5.46 98373 1d2sA 170 8.65e+01 1d2sA b.29.1.4 24221 1eaiC 61 8.69e+01 1eaiC g.22.1.1 44894 1n9eA 787 8.70e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1lxjA 104 8.87e+01 d.58.48.1 84736 1jae 471 8.98e+01 1smd b.71.1.1,c.1.8.1 27773,28760