# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bf2 750 9.20e-01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1vjvA 415 1.11e+00 d.3.1.9 108632 1jsdA 319 1.83e+00 b.19.1.2 63258 1dkuA 317 2.09e+00 1dkuA c.61.1.2,c.61.1.2 34118,34119 1c9oA 66 2.14e+00 1mjc b.40.4.5 25325 1ev7A 317 2.17e+00 1ev7B c.52.1.9 33315 1fjgK 129 2.18e+00 1fjfK c.55.4.1 33733 1jsmA 325 2.61e+00 b.19.1.2 63264 1eu3A 210 2.68e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 1fjrA 195 2.73e+00 1fjrA b.102.1.1 59855 1dgwA 178 3.16e+00 1dgwA b.82.1.2 28090 1hh8A 213 3.32e+00 1e96B a.118.8.1 61042 1vhsA 175 3.62e+00 d.108.1.1 100698 1snrA 341 3.74e+00 b.6.1.3,b.6.1.3 105823,105824 2gfaA 119 3.77e+00 1wkrA 340 3.92e+00 b.50.1.2 109395 1c8uA 285 4.01e+00 1c8uA d.38.1.3,d.38.1.3 38547,38548 1d4tA 104 4.63e+00 1d4tA d.93.1.1 40537 1i8kA 107 4.77e+00 b.1.1.1 71130 1gj7B 253 4.80e+00 1vdwA 254 4.90e+00 e.7.1.1 100569 1inlA 296 4.98e+00 c.66.1.17 66220 1jovA 270 5.17e+00 b.30.5.7 84192 1b12A 248 5.75e+00 1b12A b.87.1.2 28388 1o7nA 449 5.96e+00 b.33.1.2,d.129.3.3 81162,81163 1k7iA 479 6.19e+00 b.80.7.1,d.92.1.6 77281,77282 2mcm 112 6.50e+00 2mcm b.1.7.1 22207 1ee6A 197 6.60e+00 1ee6A b.80.1.1 28024 1n7oA 721 6.88e+00 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1vr9A 213 7.46e+00 1d2tA 231 7.59e+00 1d2tA a.111.1.1 19052 1h2wA 710 7.62e+00 b.69.7.1,c.69.1.4 76596,76597 1t92A 116 7.64e+00 1geeA 261 8.00e+00 c.2.1.2 90509 1f53A 84 8.03e+00 1f53A b.11.1.4 23632 1wwzA 159 8.14e+00 1yb3A 175 8.29e+00 1rqpA 299 8.35e+00 b.141.1.1,c.132.1.1 97754,97755 1el6A 219 8.91e+00 1el6B d.182.1.1 42606 1a8q 274 9.12e+00 1brt c.69.1.12 34702 1n62C 288 9.28e+00 d.87.2.1,d.145.1.3 80094,80095 1gycA 499 9.34e+00 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1b0uA 262 9.38e+00 1b0uA c.37.1.12 32370 1nnxA 109 9.43e+00 b.40.10.1 92013 1v6pA 62 9.85e+00 1jb0D 138 1.00e+01 1jb0D d.187.1.1 62823 1ts9A 102 1.07e+01 1ro7A 259 1.09e+01 c.130.1.1 97667 1kqfC 217 1.10e+01 f.21.1.1 72874 1u9cA 224 1.13e+01 1pv5A 264 1.15e+01 d.251.1.1 95150 1kv7A 488 1.16e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1go3E 187 1.16e+01 b.40.4.5,d.230.1.1 83054,83055 1kcqA 104 1.17e+01 d.109.1.1 68449 1udzA 182 1.22e+01 b.51.1.1 99239 1hkyA 86 1.26e+01 g.10.1.3 76714 1dwkA 156 1.27e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1iyeA 309 1.28e+01 e.17.1.1 83786 1mfgA 95 1.30e+01 b.36.1.1 79043 1pkoA 139 1.30e+01 b.1.1.1 88147 1bia 321 1.32e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1xttA 216 1.36e+01 1gy7A 125 1.46e+01 d.17.4.2 70738 1f35A 162 1.55e+01 1f35A b.94.1.1 59628 1whzA 70 1.56e+01 4ubpA 101 1.58e+01 1ubpA d.8.1.1 37352 1dg6A 191 1.58e+01 1d4vB b.22.1.1 23883 1oruA 195 1.63e+01 b.58.1.2 93464 1cv8 174 1.64e+01 1cv8 d.3.1.1 37089 1k2xB 143 1.66e+01 1uscA 178 1.70e+01 b.45.1.2 99860 1se8A 301 1.71e+01 b.40.4.3 105448 1h8eH 146 1.78e+01 1e79H b.93.1.1 60757 1hpi 71 1.80e+01 1ckuA g.35.1.1 44995 1n08A 163 1.82e+01 b.43.5.1 79730 1o54A 277 1.86e+01 c.66.1.13 92482 1mc2A 122 1.86e+01 a.133.1.2 74622 1bywA 110 1.97e+01 1bywA d.110.3.6 40912 1agqA 135 1.97e+01 1agqA g.17.1.2 44789 1hg8A 349 2.01e+01 b.80.1.3 65830 1g4mA 393 2.02e+01 b.1.18.11,b.1.18.11 65143,65144 1yx1A 264 2.02e+01 1bm8 99 2.04e+01 1bm8 d.34.1.1 38528 1ikpA 613 2.05e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1l7lA 121 2.12e+01 b.18.1.16 77790 1qwrA 319 2.19e+01 b.82.1.3 96491 1g4iA 123 2.24e+01 1poa a.133.1.2 60241 1jb0A 755 2.26e+01 1jb0A f.29.1.1 62820 1ahsA 126 2.31e+01 1ahsA b.19.1.1 23794 1vp6A 138 2.33e+01 2evbA 74 2.37e+01 1v33A 366 2.42e+01 d.264.1.1 100278 1kt6A 183 2.42e+01 b.60.1.1 84466 1jyhA 157 2.45e+01 d.60.1.3 71956 1s3eA 520 2.47e+01 c.3.1.2,d.16.1.5 98426,98427 1sluA 142 2.48e+01 1sluA b.16.1.1 23685 1hx0A 496 2.48e+01 b.71.1.1,c.1.8.1 61346,61347 1eaiC 61 2.49e+01 1eaiC g.22.1.1 44894 1a3aA 148 2.50e+01 1a3aA d.112.1.1 40917 1a8y 367 2.50e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1tuaA 191 2.55e+01 d.51.1.1,d.51.1.1 107321,107322 1i8aA 189 2.55e+01 1i82A b.1.9.2 61951 1g4wR 383 2.59e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1ruwA 69 2.59e+01 1ynbA 173 2.60e+01 1ji6A 589 2.61e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1earA 147 2.62e+01 b.107.1.1,d.58.38.1 64875,64876 1gcqC 70 2.72e+01 1gcpA b.34.2.1 60436 1avaC 181 2.77e+01 1avaC b.42.4.1 25604 1ic6A 279 2.86e+01 1gci c.41.1.1 62257 1y4wA 518 2.88e+01 1eejA 216 2.95e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1g6gA 127 2.96e+01 1g6gA b.26.1.2 23916 1g7sA 594 2.98e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1oxxK 353 3.00e+01 b.40.6.3,c.37.1.12 93715,93716 1euwA 152 3.01e+01 1dupA b.85.4.1 28349 1v5vA 401 3.02e+01 1rvkA 382 3.05e+01 c.1.11.2,d.54.1.1 97928,97929 1p1mA 406 3.06e+01 b.92.1.4,c.1.9.9 87696,87697 1ad2 228 3.06e+01 1ad2 e.24.1.1 43353 1fyhB 229 3.09e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1jnrA 643 3.14e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1n9eA 787 3.14e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1u4gA 301 3.18e+01 d.92.1.2 107670 1qxyA 252 3.19e+01 d.127.1.1 96565 1ihjA 98 3.20e+01 1pdr b.36.1.1 62382 1fmhA 33 3.20e+01 1fmhB k.6.1.1 46409 1jofA 365 3.22e+01 b.69.10.1 71775 1i7nA 309 3.22e+01 c.30.1.5,d.142.1.3 83681,83682 1jb7B 260 3.24e+01 1otcB b.40.4.3 62839 1gttA 429 3.24e+01 d.177.1.1,d.177.1.1 70529,70530 1dcoA 104 3.26e+01 1dcpA d.74.1.1 39680 1o1yA 239 3.33e+01 c.23.16.1 86554 1d7qA 143 3.38e+01 1d7qA b.40.4.5 25331 1ug6A 431 3.39e+01 c.1.8.4 88490 1t2dA 322 3.48e+01 c.2.1.5,d.162.1.1 99084,99085 1rm6A 769 3.52e+01 1hn4A 131 3.67e+01 a.133.1.2 65893 1d4xG 126 3.67e+01 1d0nA d.109.1.1 59109 1x9iA 302 3.77e+01 1a8s 273 3.87e+01 1brt c.69.1.12 34710 1f39A 101 3.87e+01 1umuA b.87.1.1 28386 1kwgA 645 3.87e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1n6aA 259 3.87e+01 b.76.2.1,b.85.7.1 80121,80122 1bf6A 291 3.90e+01 1pscA c.1.9.3 29065 1d0dA 60 3.90e+01 1kigI g.8.1.2 44566 1ajj 37 3.99e+01 1ajj g.12.1.1 44609 1enwA 114 4.08e+01 1enwA a.5.4.1 16291 1aisA 182 4.08e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1pp0A 199 4.18e+01 d.103.1.1 104211 1qddA 144 4.24e+01 1qddA d.169.1.1 42324 1lxjA 104 4.24e+01 d.58.48.1 84736 1fjgP 88 4.26e+01 1emwA d.27.1.1 38444 1j48A 110 4.38e+01 b.1.7.1 84112 1pmi 440 4.38e+01 1pmi b.82.1.3 28114 1mhnA 59 4.45e+01 b.34.9.1 84964 1b35B 255 4.45e+01 1b35B b.121.4.1 23334 1cixA 44 4.52e+01 g.3.6.2 70066 1v30A 124 4.54e+01 2tnfA 156 4.56e+01 2tnfA b.22.1.1 23880 1g2rA 100 4.57e+01 1g2rA d.192.1.1 60231 1fhgA 154 4.58e+01 1tlk b.1.1.4 21706 1i0vA 104 4.65e+01 9rnt d.1.1.4 36054 1hulA 108 4.69e+01 1hulA a.26.1.2 16865 1yg9A 330 4.69e+01 1iukA 140 4.74e+01 c.2.1.8 83712 1fnlA 175 4.74e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1kmvA 186 4.78e+01 c.71.1.1 72757 1gvkB 240 4.78e+01 b.47.1.2 70610 1ja1A 622 4.80e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1jc4A 148 4.89e+01 1jc4A d.32.1.4 62863 1sz7A 200 4.91e+01 1ewkA 490 4.93e+01 1ewkA c.93.1.1 35712 1j96A 323 4.94e+01 c.1.7.1 71616 1go3F 107 4.97e+01 a.60.8.2 65407 1jlyA 304 4.99e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1eaxA 241 5.04e+01 b.47.1.2 64889 1onwA 390 5.04e+01 b.92.1.7,c.1.9.13 87172,87173 1senA 164 5.12e+01 c.47.1.1 105465 1nykA 165 5.15e+01 b.33.1.1 86408 1dykA 394 5.16e+01 1dykA b.29.1.4,b.29.1.4 24223,24224 1crzA 403 5.17e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1rutX 188 5.21e+01 1lvmA 229 5.30e+01 b.47.1.3 78243 1elt 236 5.30e+01 5ptp b.47.1.2 26281 1x82A 190 5.31e+01 1h54A 754 5.35e+01 a.102.1.4,b.30.5.3 60634,60635 1ecfA 504 5.36e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1jy1A 464 5.38e+01 d.136.1.3,d.136.1.3 67438,67439 1i26A 34 5.39e+01 g.3.6.3 65986 1gkpA 458 5.42e+01 b.92.1.3,c.1.9.6 70231,70232 1s3cA 141 5.42e+01 1ddjA 247 5.45e+01 5ptp b.47.1.2 26362 1vjoA 393 5.45e+01 c.67.1.3 100827 4uagA 437 5.52e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1gkmA 509 5.53e+01 a.127.1.2 70228 1jigA 146 5.60e+01 a.25.1.1 71685 1b77A 228 5.61e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1ogwA 76 5.61e+01 d.15.1.1 87001 1eluA 390 5.63e+01 1elqA c.67.1.3 34434 1vfyA 73 5.66e+01 1vfyA g.50.1.1 45357 1tvxA 75 5.69e+01 1tvxA d.9.1.1 37441 1e0nA 27 5.76e+01 b.72.1.1 27807 1wp5A 323 5.77e+01 7a3hA 303 5.80e+01 7a3hA c.1.8.3 28817 1fs0E 138 5.83e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1r62A 160 5.83e+01 d.122.1.3 104816 1cqyA 99 5.84e+01 1b9zA b.3.1.1 22527 1kolA 398 5.85e+01 b.35.1.2,c.2.1.1 77474,77475 1wlgA 299 5.87e+01 1gk9B 557 5.94e+01 1e9gA 286 5.95e+01 1wgjA b.40.5.1 59393 1o7iA 119 5.96e+01 b.40.4.3 86642 1fc3A 120 5.96e+01 1fc3A a.4.6.3 16237 1gpc 218 6.00e+01 1gpc b.40.4.7 25393 1i2aA 219 6.02e+01 e.24.1.1 90660 1ooyA 481 6.02e+01 c.124.1.3,c.124.1.2 93388,93389 1g94A 448 6.08e+01 b.71.1.1,c.1.8.1 65169,65170 1jltA 122 6.08e+01 a.133.1.2 66867 1nar 290 6.13e+01 1nar c.1.8.5 28988 1ayx 492 6.21e+01 1ayx a.102.1.1 18825 1ejxA 100 6.21e+01 d.8.1.1 83182 1xgkA 352 6.22e+01 1vbiA 344 6.25e+01 1cruA 454 6.30e+01 1c9uA b.68.2.1 27617 1k6iA 352 6.30e+01 c.2.1.2 68223 1fiqB 350 6.31e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1oi2A 366 6.32e+01 c.119.1.2 103802 1ejfA 125 6.35e+01 1ejfA b.15.1.2 23683 1frb 315 6.39e+01 1frb c.1.7.1 28665 1mba 147 6.39e+01 2fal a.1.1.2 15149 1tkeA 224 6.44e+01 1dq3A 454 6.46e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1oi6A 205 6.47e+01 b.82.1.1 103940 1cyo 93 6.51e+01 1cyo d.120.1.1 41065 1iq6A 134 6.53e+01 d.38.1.4 76755 1gtzA 156 6.53e+01 c.23.13.1 70539 1dyqA 234 6.57e+01 3seb b.40.2.2,d.15.6.1 59140,59141 1f89A 291 6.58e+01 d.160.1.1 64988 1jmxA 494 6.67e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1hxrA 115 6.77e+01 1fwqA b.88.1.1 28392 1bxvA 91 6.87e+01 1aac b.6.1.1 22875 1kqrA 179 6.94e+01 b.29.1.14 72886 1gh9A 71 6.95e+01 1gh9A g.41.6.1 45266 1iruK 201 7.03e+01 d.153.1.4 71362 1ne9A 335 7.13e+01 d.108.1.4,d.108.1.4 91839,91840 1cvrA 435 7.20e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1ew4A 106 7.28e+01 1ew4A d.82.2.1 40023 1b9uA 34 7.36e+01 1b9uA j.35.1.1 46260 1us0A 316 7.37e+01 c.1.7.1 99850 1jfuA 186 7.39e+01 c.47.1.10 62940 1jihA 531 7.42e+01 d.240.1.1,e.8.1.7 90374,90375 1dypA 271 7.45e+01 1dypA b.29.1.2 24185 1gnuA 117 7.49e+01 d.15.1.3 65403 1fepA 724 7.55e+01 1fepA f.4.3.3 43808 1gnxA 479 7.56e+01 c.1.8.4 76241 1d2sA 170 7.56e+01 1d2sA b.29.1.4 24221 1i1qB 192 7.58e+01 1qdlB c.23.16.1 61544 2ciaA 102 7.66e+01 1fp3A 402 7.68e+01 1fp3A a.102.1.3 18842 1uxzA 131 7.72e+01 b.18.1.10 100170 1hjiB 26 7.80e+01 j.9.5.1 65847 1ahl 49 7.82e+01 1ahl g.9.1.1 44601 1od3A 168 7.94e+01 b.18.1.10 86825 1bcpB 199 8.01e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1vimA 200 8.06e+01 c.80.1.3 100758 1b65A 375 8.11e+01 1b65A d.154.1.1 42020 1rcqA 357 8.23e+01 b.49.2.2,c.1.6.1 104882,104883 1lycA 343 8.25e+01 a.93.1.1 74344 1q9uA 130 8.34e+01 d.129.7.1 96314 1g2cA 52 8.44e+01 1g2cA h.3.2.1 45767 1fm4A 159 8.59e+01 1bv1 d.129.3.1 76186 1g291 372 8.66e+01 1g291 1dekA 241 8.85e+01 1dekA c.37.1.1 31842 1f20A 435 8.85e+01 b.43.4.1,c.25.1.4 64932,64933 1dofA 403 8.90e+01 1c3cA a.127.1.1 19429 1dcfA 136 8.91e+01 1dcfA c.23.1.2 31124 1js1X 324 8.91e+01 c.78.1.1,c.78.1.1 71834,71835 1hkhA 279 8.93e+01 c.69.1.12 90628 1umgA 362 8.96e+01 d.280.1.1 107956 1t2wA 145 8.99e+01 b.100.1.1 106289