# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 4ubpA 101 2.21e+00 1ubpA d.8.1.1 37352 1d4tA 104 2.25e+00 1d4tA d.93.1.1 40537 1hpi 71 2.84e+00 1ckuA g.35.1.1 44995 1e6bA 221 3.34e+00 1e6bA a.45.1.1,c.47.1.5 59294,59295 1aiw 62 3.65e+00 1aiw b.72.2.1 27808 1d0dA 60 3.67e+00 1kigI g.8.1.2 44566 1o6sB 105 5.53e+00 b.1.6.1 81096 1agqA 135 8.17e+00 1agqA g.17.1.2 44789 1gtzA 156 8.17e+00 c.23.13.1 70539 1vp6A 138 9.31e+00 1im3D 95 9.54e+00 1im3D b.1.18.5 62568 1dcoA 104 1.21e+01 1dcpA d.74.1.1 39680 1pg4A 652 1.22e+01 e.23.1.1 88067 1gyxA 76 1.38e+01 d.80.1.1 76387 1eaiC 61 1.39e+01 1eaiC g.22.1.1 44894 1mof 55 1.41e+01 1mof h.3.2.1 46324 1ejxA 100 1.51e+01 d.8.1.1 83182 1bxyA 60 1.56e+01 1bxyA d.59.1.1 39525 1dkuA 317 1.57e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1j27A 102 1.77e+01 d.58.50.1 90778 1giqA 413 1.84e+01 d.166.1.1,d.166.1.1 76224,76225 1gy7A 125 2.01e+01 d.17.4.2 70738 1bcpD 110 2.34e+01 1bcpD b.40.2.1 25132 1efnB 152 2.41e+01 1efnB d.102.1.1 40699 1o97D 320 2.43e+01 c.26.2.3,c.31.1.2 81233,81234 1guuA 52 2.43e+01 a.4.1.3 83332 1fjnA 39 2.44e+01 1fjnA g.3.7.3 44171 1g2cB 43 2.47e+01 1g2cB 1o54A 277 2.48e+01 c.66.1.13 92482 1k3yA 221 2.50e+01 a.45.1.1,c.47.1.5 77245,77246 1ks8A 433 2.87e+01 a.102.1.2 77519 1nwaA 203 2.96e+01 d.58.28.1 86295 1udzA 182 3.09e+01 b.51.1.1 99239 1edg 380 3.12e+01 1edg c.1.8.3 28807 1j09A 468 3.25e+01 a.97.1.1,c.26.1.1 77025,77026 1c9oA 66 3.35e+01 1mjc b.40.4.5 25325 1hynP 379 3.38e+01 1hynP d.112.1.2 61408 1hbnC 248 3.50e+01 1mroC d.58.31.1 60902 1mba 147 3.55e+01 2fal a.1.1.2 15149 1mun 225 3.56e+01 1mun a.96.1.2 18744 1ijvA 36 3.69e+01 g.9.1.1 66169 1vhtA 218 3.83e+01 c.37.1.1 100700 1bm8 99 3.95e+01 1bm8 d.34.1.1 38528 1g31A 111 4.00e+01 1g31A b.35.1.1 24656 1bh9B 89 4.13e+01 1bh9B a.22.1.3 16485 1fjgK 129 4.24e+01 1fjfK c.55.4.1 33733 1gy6A 127 4.39e+01 d.17.4.2 70736 1i4uA 181 4.47e+01 b.60.1.1 61732 1iioA 84 4.63e+01 a.39.4.1 66150 1ep0A 185 4.66e+01 1dzrA b.82.1.1 28080 1g60A 260 4.68e+01 c.66.1.11 70151 1g2qA 187 4.73e+01 c.61.1.1 65117 1mk4A 157 4.88e+01 d.108.1.1 84979 1htrP 43 4.90e+01 1htrP b.50.1.2 26852 1ev7A 317 5.12e+01 1ev7B c.52.1.9 33315 1whi 122 5.34e+01 1whi b.39.1.1 24810 1gcqC 70 5.41e+01 1gcpA b.34.2.1 60436 1ei5A 520 5.53e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1fl0A 171 5.54e+01 1eujA b.40.4.4 25315 1mxrA 375 5.55e+01 a.25.1.2 85197 1wwzA 159 5.73e+01 1r7aA 504 5.80e+01 b.71.1.1,c.1.8.1 97192,97193 1ayx 492 5.85e+01 1ayx a.102.1.1 18825 1cdcA 99 5.89e+01 1cdcA b.1.1.1 19746 1bec 238 5.89e+01 1bec b.1.1.1,b.1.1.2 20627,21561 1iwcA 34 5.94e+01 j.99.1.1 76872 1ee6A 197 6.02e+01 1ee6A b.80.1.1 28024 1eu3A 210 6.05e+01 1an8 b.40.2.2,d.15.6.1 25206,37795 1pyfA 312 6.09e+01 c.1.7.1 95334 1fjgP 88 6.27e+01 1emwA d.27.1.1 38444 1e1oA 504 6.31e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1g4iA 123 6.36e+01 1poa a.133.1.2 60241 1h6kA 757 6.45e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1qmvA 197 6.52e+01 1qq2A c.47.1.10 33066 1yb3A 175 6.52e+01 1h32A 261 6.52e+01 a.3.1.8,a.3.1.8 76618,76619 1koe 172 6.56e+01 1koe d.169.1.5 42448 1p99A 295 6.67e+01 c.94.1.1 94384 1se8A 301 6.90e+01 b.40.4.3 105448 1cv8 174 6.97e+01 1cv8 d.3.1.1 37089 1cn3F 29 7.04e+01 1fnnA 389 7.11e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1e4fT 419 7.14e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1vhsA 175 7.15e+01 d.108.1.1 100698 1xjuA 163 7.19e+01 1iro 54 7.22e+01 1rb9 g.41.5.1 45223 1devB 41 7.22e+01 1devB j.64.1.1 46354 2evbA 74 7.26e+01 1xg0A 76 7.35e+01 1ihjA 98 7.42e+01 1pdr b.36.1.1 62382 1icpA 376 7.47e+01 1oyc c.1.4.1 62270 1gc0A 398 7.60e+01 c.67.1.3 70168 1iyhA 198 7.63e+01 a.45.1.1,c.47.1.5 83790,83791 3eipA 84 7.64e+01 3eipA d.26.2.1 38434 1h7eA 245 7.74e+01 c.68.1.13 60717 1fd3A 41 7.85e+01 1fd3A g.9.1.1 44572 1dcfA 136 7.87e+01 1dcfA c.23.1.2 31124 1i1wA 303 7.96e+01 c.1.8.3 76732 1y8aA 332 7.99e+01 1vsrA 136 8.04e+01 1vsrA c.52.1.15 33332 1vqqA 646 8.06e+01 1hfoA 113 8.15e+01 d.80.1.3 61006 1amx 180 8.24e+01 1amx b.2.3.1 22410 1upqA 123 8.26e+01 1ryaA 160 8.56e+01 d.113.1.5 105122 1axh 37 8.66e+01 1axh g.3.6.2 44109 1xfkA 336 8.95e+01