# List of top-scoring protein chains for T0289.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rflA 172 1.29e+00 c.37.1.8 97384 2b43A 526 2.70e+00 1uqrA 154 6.71e+00 c.23.13.1 99779 1sh0A 510 7.10e+00 e.8.1.4 98876 4ubpA 101 9.04e+00 1ubpA d.8.1.1 37352 1ie7A 100 9.13e+00 1ubpA d.8.1.1 62313 2a72A 146 1.12e+01 2afrA 231 1.14e+01 1rqjA 299 1.25e+01 a.128.1.1 97744 1rqiA 300 1.25e+01 a.128.1.1 97742 1giqA 413 1.35e+01 d.166.1.1,d.166.1.1 76224,76225 1zagA 274 1.42e+01 1agdA b.1.1.2,d.19.1.1 20851,38315 1t7vA 278 1.90e+01 1tux 301 2.10e+01 1taxA c.1.8.3 28907 1ytkA 398 2.24e+01 1h0cA 392 2.25e+01 c.67.1.3 83424 1x5aA 107 2.31e+01 1i1wA 303 2.41e+01 c.1.8.3 76732 2bnjA 303 2.41e+01 1ks8A 433 2.75e+01 a.102.1.2 77519 1vbkA 307 2.77e+01 1j04A 392 2.79e+01 c.67.1.3 90734 1k6aA 303 2.91e+01 c.1.8.3 72081 2fpfA 71 2.96e+01 2fpeA 62 3.11e+01 1h2hA 241 3.12e+01 d.81.1.3,c.2.1.3 70861,83058 1q3eA 207 3.15e+01 b.82.3.2 95669 1wwzA 159 3.17e+01 1mqhA 263 3.23e+01 c.94.1.1 91397 1k46A 136 3.27e+01 d.195.1.1 68125 1j5pA 253 3.30e+01 d.81.1.3,c.2.1.3 71577,83092 1hufA 140 3.61e+01 1hufA d.195.1.1 61272 2ayuA 417 3.62e+01 1eoqA 96 3.63e+01 1d1dA a.28.3.1 16959 2anjA 263 3.69e+01 1mb4A 370 3.75e+01 c.2.1.3,d.81.1.1 78908,78909 2ftzA 284 3.78e+01 1p1oA 263 4.01e+01 c.94.1.1 87699 1mqdA 261 4.06e+01 c.94.1.1 85049 1m5dA 263 4.12e+01 c.94.1.1 78641 1lbcA 263 4.14e+01 c.94.1.1 73805 1mqiA 263 4.14e+01 c.94.1.1 91398 1lbbA 263 4.19e+01 c.94.1.1 73804 2forA 323 4.20e+01 2b8nA 429 4.26e+01 1nsqA 153 4.39e+01 1npk d.58.6.1 39135 1ftkA 279 4.49e+01 1gr2A c.94.1.1 35819 1ejxA 100 4.50e+01 d.8.1.1 83182 1p1wA 263 4.52e+01 c.94.1.1 87713 1ojxA 263 4.58e+01 c.1.10.1 93164 1mvpA 124 4.63e+01 2rspB b.50.1.1 26775 1lb8A 263 4.66e+01 c.94.1.1 73800 1w8sA 263 4.67e+01 1w8rA 263 4.70e+01 1z1vA 80 4.83e+01 2ljrA 244 5.05e+01 1ljrA a.45.1.1,c.47.1.5 17709,33003 1uqvA 85 5.26e+01 a.60.1.2 99798 1v30A 124 5.27e+01 1mk4A 157 5.27e+01 d.108.1.1 84979 2rspA 124 5.45e+01 2rspB b.50.1.1 26771 1pv8A 330 5.53e+01 c.1.10.3 95155 1jt8A 102 5.81e+01 b.40.4.5 63279 1e51A 330 5.97e+01 1b4kA c.1.10.3 59254 1gtzA 156 6.04e+01 c.23.13.1 70539 1ta3B 303 6.05e+01 c.1.8.3 106732 1idm 343 6.06e+01 1cnzA c.77.1.1 35035 2fug6 181 6.33e+01 1ipd 345 6.39e+01 1cnzA c.77.1.1 35038 1xaa 345 6.39e+01 1cnzA c.77.1.1 35033 1o9rA 162 6.42e+01 a.25.1.1 86706 1gc9A 345 6.48e+01 1cnzA c.77.1.1 35037 1g2uA 345 6.49e+01 1cnzA c.77.1.1 35036 1walA 345 6.56e+01 1cnzA c.77.1.1 35041 1dr8A 344 6.57e+01 1cnzA c.77.1.1 35051 1yabA 87 6.57e+01 1osjA 345 6.57e+01 1cnzA c.77.1.1 35039 1dr0A 346 6.59e+01 1cnzA c.77.1.1 35045 1m6eX 359 6.61e+01 c.66.1.35 91188 1dpzA 349 6.62e+01 1cnzA c.77.1.1 35053 1gc8A 345 6.66e+01 1cnzA c.77.1.1 35042 1e6bA 221 6.70e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 2ai4A 119 6.87e+01 1gu1A 156 7.04e+01 c.23.13.1 70563 1vlqA 337 7.31e+01 c.69.1.25 108848 1sj5A 164 7.32e+01 1udzA 182 7.33e+01 b.51.1.1 99239 1yv1A 202 7.33e+01 1o6aA 96 7.35e+01 b.139.1.1 92562 1wnyA 186 7.36e+01 1yuzA 202 7.38e+01 2bt4A 157 7.40e+01 1wk8A 194 7.53e+01 1wggA 96 7.76e+01 4blcA 506 7.91e+01 1cf9A e.5.1.1 42775 1xad 345 7.97e+01 1cnzA c.77.1.1 35055 1ic6A 279 8.07e+01 1gci c.41.1.1 62257 1xn5A 146 8.23e+01 1j5uA 136 8.39e+01 d.208.1.1 71584 1wv8A 73 8.57e+01 1va0A 239 8.80e+01 2g9dA 350 8.86e+01 1ut9A 609 8.88e+01 a.102.1.2,b.1.18.2 99912,99913 1dghA 498 8.89e+01 1cf9A e.5.1.1 42790 1dgfA 497 8.89e+01 1cf9A e.5.1.1 42782 1rq5A 610 8.95e+01 a.102.1.2,b.1.18.2 97730,97731