# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjvA 415 3.63e+00 d.3.1.9 108632 1fjgK 129 3.63e+00 1fjfK c.55.4.1 33733 1mjc 69 6.38e+00 1mjc b.40.4.5 25319 2fsrA 195 6.63e+00 2fpeA 62 6.90e+00 1wjnA 97 7.73e+00 1yu6A 275 8.01e+00 1qhxA 178 8.08e+00 1qhsA c.37.1.3 31936 1r0rE 274 8.19e+00 c.41.1.1 96735 2a72A 146 8.95e+00 1bf2 750 9.23e+00 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1zkoA 136 9.78e+00 1lshA 1056 1.05e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1vjlA 164 1.10e+01 d.257.1.1 100822 1gj7B 253 1.17e+01 1c5yB 253 1.17e+01 5ptp 1zkpA 268 1.19e+01 1xn5A 146 1.21e+01 1lw6E 281 1.21e+01 c.41.1.1 74293 1sup 275 1.21e+01 1gci c.41.1.1 32510 1to2E 281 1.21e+01 2fdiA 211 1.28e+01 1u69A 163 1.33e+01 d.32.1.7 107699 1ee6A 197 1.37e+01 1ee6A b.80.1.1 28024 1c9oA 66 1.54e+01 1mjc b.40.4.5 25325 1cseE 274 1.60e+01 1gci c.41.1.1 32481 1kcqA 104 1.61e+01 d.109.1.1 68449 1uliA 460 1.62e+01 b.33.1.2,d.129.3.3 107921,107922 1wkaA 147 1.65e+01 1mwmA 320 1.86e+01 c.55.1.1,c.55.1.1 79580,79581 1g31A 111 1.95e+01 1g31A b.35.1.1 24656 1v88A 130 1.98e+01 b.55.1.1 108423 1o6aA 96 1.99e+01 b.139.1.1 92562 1sv6A 269 2.20e+01 d.177.1.1 106043 2ff4A 388 2.23e+01 1vbkA 307 2.28e+01 1q38A 89 2.35e+01 b.1.2.1 95663 1v6pA 62 2.44e+01 1yt5A 258 2.44e+01 1ro7A 259 2.49e+01 c.130.1.1 97667 1eu3A 210 2.54e+01 1an8 b.40.2.2,d.15.6.1 25206,37795 2f9nA 245 2.65e+01 1g4iA 123 2.67e+01 1poa a.133.1.2 60241 1t9fA 187 2.70e+01 b.42.6.1 106710 1bm8 99 2.86e+01 1bm8 d.34.1.1 38528 2sicI 107 3.04e+01 3ssi d.84.1.1 40031 1z64A 26 3.06e+01 1gci 269 3.06e+01 1gci c.41.1.1 32503 1t1gA 364 3.13e+01 c.41.1.2 106246 1xttA 216 3.16e+01 1hn4A 131 3.27e+01 a.133.1.2 65893 1jsdA 319 3.33e+01 b.19.1.2 63258 1xwvA 129 3.35e+01 2anyA 241 3.37e+01 1rqpA 299 3.48e+01 b.141.1.1,c.132.1.1 97754,97755 1os8A 223 3.62e+01 b.47.1.1 93481 2anwA 241 3.62e+01 1sgt 223 3.63e+01 5ptp b.47.1.1 25814 1wruA 379 3.64e+01 1oacA 727 3.69e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1t3yA 141 3.71e+01 1ic6A 279 3.80e+01 1gci c.41.1.1 62257 1i8kA 107 3.86e+01 b.1.1.1 71130 1ym0A 238 3.94e+01 1szoA 257 3.95e+01 c.14.1.3 106164 1vdwA 254 3.96e+01 e.7.1.1 100569 1mqiA 263 3.97e+01 c.94.1.1 91398 1y1oA 203 4.08e+01 1vfqA 143 4.11e+01 1nekA 588 4.13e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1iw8A 231 4.15e+01 a.111.1.1 76866 1lrzA 426 4.17e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1x13A 401 4.20e+01 1gt91 357 4.21e+01 1ppa 121 4.24e+01 1poa a.133.1.2 19550 1ftkA 279 4.24e+01 1gr2A c.94.1.1 35819 1d2tA 231 4.29e+01 1d2tA a.111.1.1 19052 1c8uA 285 4.30e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1s8iA 121 4.33e+01 a.133.1.2 98735 1a8y 367 4.35e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1svy 114 4.35e+01 1svy d.109.1.1 40831 1s9aA 257 4.42e+01 b.3.6.1 105379 1ev7A 317 4.44e+01 1ev7B c.52.1.9 33315 1yqtA 538 4.53e+01 1vplA 256 4.54e+01 1o54A 277 4.58e+01 c.66.1.13 92482 1te5A 257 4.60e+01 d.153.1.1 106795 1pne 140 4.69e+01 1pne d.110.1.1 40866 1y4lA 121 4.77e+01 1be9A 119 4.77e+01 1pdr b.36.1.1 24774 1php 394 4.78e+01 16pk c.86.1.1 35452 1tygB 87 4.81e+01 d.15.3.2 107455 1hpi 71 4.86e+01 1ckuA g.35.1.1 44995 1vhsA 175 4.92e+01 d.108.1.1 100698 2bbvA 363 5.00e+01 2bbvA b.121.4.4 23323 2cw8A 537 5.02e+01 1t2lA 141 5.03e+01 1mojA 182 5.05e+01 a.25.1.1 91367 2mcm 112 5.07e+01 2mcm b.1.7.1 22207 1ikpA 613 5.13e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1ltoA 245 5.17e+01 b.47.1.2 84707 4dpvZ 584 5.24e+01 2cas b.121.5.2 23377 1mfgA 95 5.39e+01 b.36.1.1 79043 1sh7A 284 5.40e+01 1tjoA 182 5.42e+01 1yozA 116 5.48e+01 1tcvA 287 5.52e+01 1sf9A 128 5.73e+01 b.34.15.1 98831 1qh3A 260 5.94e+01 1qh5A d.157.1.2 42059 1ktjA 129 5.94e+01 b.1.18.7 72974 2bx6A 350 5.96e+01 1zxiC 288 5.99e+01 1cf1A 404 6.11e+01 1cf1A b.1.18.11,b.1.18.11 21907,21908 3c2c 112 6.12e+01 1ycc a.3.1.1 15885 1xxsA 122 6.13e+01 1s5aA 150 6.15e+01 d.17.4.10 98525 1ymiA 334 6.18e+01 1udmA 149 6.23e+01 d.109.1.2 107780 1inlA 296 6.24e+01 c.66.1.17 66220 1pm4A 119 6.29e+01 b.135.1.1 94891 2adgA 214 6.30e+01 1wsrA 375 6.30e+01 1jnuA 104 6.34e+01 d.110.3.6 71762 1o0pA 104 6.47e+01 d.58.7.1 86535 1a3aA 148 6.50e+01 1a3aA d.112.1.1 40917 1eg9A 449 6.58e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1qh5A 260 6.63e+01 1qh5A d.157.1.2 42057 1g71A 347 6.65e+01 1g71A d.264.1.1 43268 1m1zA 513 6.65e+01 c.26.2.1,d.153.1.1 78457,78458 1o7nA 449 6.67e+01 b.33.1.2,d.129.3.3 81162,81163 1ddjA 247 6.93e+01 5ptp b.47.1.2 26362 1q6hA 224 6.96e+01 d.26.1.1 95975 1qexA 288 7.01e+01 1qexA b.32.1.1 24425 1o8uA 257 7.08e+01 c.14.1.3 81194 1aiw 62 7.10e+01 1aiw b.72.2.1 27808 1n62C 288 7.14e+01 d.87.2.1,d.145.1.3 80094,80095 1ojxA 263 7.24e+01 c.1.10.1 93164 1dkuA 317 7.33e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1agqA 135 7.35e+01 1agqA g.17.1.2 44789 1yavA 159 7.37e+01 1sqhA 312 7.40e+01 d.108.1.5 98966 4ubpA 101 7.44e+01 1ubpA d.8.1.1 37352 1r4xA 275 7.47e+01 b.1.10.3,d.105.1.2 97054,97055 1qj2C 285 7.51e+01 1qj2C 1tl2A 236 7.51e+01 1tl2A b.67.1.1 27541 1q6uA 245 7.52e+01 d.26.1.1 95998 1lxjA 104 7.52e+01 d.58.48.1 84736 1ri9A 102 7.63e+01 b.34.2.1 97506 1zxiF 288 7.68e+01 1ijaA 148 7.77e+01 1ijaA b.100.1.1 62484 1b7yA 350 7.88e+01 1pysA d.104.1.1 40776 1vr9A 213 7.88e+01 1ve4A 206 7.93e+01 1lr7A 74 7.99e+01 g.3.11.3,g.68.1.1 84679,84680 1w8sA 263 8.07e+01 1vkyA 347 8.21e+01 e.53.1.1 108696 2sga 181 8.31e+01 1qq4A b.47.1.1 25808 1vixA 420 8.34e+01 c.56.5.4,d.58.19.1 100777,100778 1el6A 219 8.39e+01 1el6B d.182.1.1 42606 1kjvA 284 8.65e+01 b.1.1.2,d.19.1.1 77421,77422 2ai4A 119 8.68e+01 2b3wA 168 8.76e+01 1eguA 731 8.87e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1e79H 146 8.90e+01 1e79H a.2.10.1,b.93.1.1 15721,28438 1rm6A 769 8.92e+01