# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b43A 526 2.46e-01 4ubpA 101 1.71e+00 1ubpA d.8.1.1 37352 2fpeA 62 5.39e+00 1ojxA 263 5.54e+00 c.1.10.1 93164 1w8sA 263 5.59e+00 1z2cB 383 6.98e+00 1sh0A 510 8.36e+00 e.8.1.4 98876 1dcoA 104 9.70e+00 1dcpA d.74.1.1 39680 1w07A 659 1.07e+01 1om1A 332 1.11e+01 d.144.1.7 93347 1udzA 182 1.25e+01 b.51.1.1 99239 1wnyA 186 1.32e+01 1ftkA 279 1.41e+01 1gr2A c.94.1.1 35819 2ai4A 119 1.45e+01 1hpi 71 1.52e+01 1ckuA g.35.1.1 44995 1rqjA 299 1.52e+01 a.128.1.1 97744 1ejxA 100 1.60e+01 d.8.1.1 83182 1m2rA 327 1.63e+01 d.144.1.7 84760 1mqiA 263 1.63e+01 c.94.1.1 91398 2ayuA 417 1.68e+01 1wk8A 194 1.73e+01 1wggA 96 1.73e+01 1yuzA 202 1.77e+01 1tygB 87 1.81e+01 d.15.3.2 107455 1mk4A 157 1.86e+01 d.108.1.1 84979 2bnxA 386 1.88e+01 5reqA 727 2.01e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 1uqvA 85 2.08e+01 a.60.1.2 99798 1ic6A 279 2.13e+01 1gci c.41.1.1 62257 1edg 380 2.31e+01 1edg c.1.8.3 28807 1ei5A 520 2.33e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1reqA 727 2.46e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1wkrA 340 2.48e+01 b.50.1.2 109395 1fjgK 129 2.62e+01 1fjfK c.55.4.1 33733 3ullA 132 2.65e+01 3ullA b.40.4.3 25282 1ev7A 317 2.65e+01 1ev7B c.52.1.9 33315 1whi 122 2.73e+01 1whi b.39.1.1 24810 1ycsB 239 2.85e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1lrzA 426 3.00e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1n67A 359 3.03e+01 b.2.3.4,b.2.3.4 85354,85355 1vbkA 307 3.05e+01 1o0uA 429 3.06e+01 c.118.1.1 80743 1uqrA 154 3.10e+01 c.23.13.1 99779 1o6sB 105 3.19e+01 b.1.6.1 81096 1giqA 413 3.33e+01 d.166.1.1,d.166.1.1 76224,76225 1o0pA 104 3.38e+01 d.58.7.1 86535 1vgjA 184 3.43e+01 1hfoA 113 3.71e+01 d.80.1.3 61006 1vjvA 415 3.84e+01 d.3.1.9 108632 1vdxA 184 3.85e+01 2crvA 120 3.96e+01 1sv6A 269 4.03e+01 d.177.1.1 106043 1t1gA 364 4.03e+01 c.41.1.2 106246 1hufA 140 4.07e+01 1hufA d.195.1.1 61272 1gt91 357 4.27e+01 1lv7A 257 4.32e+01 c.37.1.20 78232 1xjuA 163 4.39e+01 1yb5A 351 4.47e+01 2b8nA 429 4.48e+01 1nbwA 607 4.59e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1yrvA 169 4.65e+01 2gd9A 189 4.71e+01 2g7jA 124 5.01e+01 1wjnA 97 5.10e+01 1nciA 110 5.21e+01 1edhA b.1.6.1 22191 1ymiA 334 5.36e+01 2viuA 328 5.52e+01 1hgeA b.19.1.2 23797 1k3sA 113 5.59e+01 d.198.1.1 68120 1qysA 106 5.88e+01 k.41.1.1 96603 1eguA 731 5.93e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1aiw 62 5.98e+01 1aiw b.72.2.1 27808 1gtzA 156 6.00e+01 c.23.13.1 70539 1xn5A 146 6.12e+01 1zkoA 136 6.40e+01 1zyeA 220 6.41e+01 1wr7A 41 6.60e+01 1d0iA 156 6.60e+01 2dhqA c.23.13.1 31383 1op3H 225 6.64e+01 b.1.1.1,b.1.1.2 87208,87209 1kexA 155 6.78e+01 b.18.1.2 77350 2sicI 107 7.16e+01 3ssi d.84.1.1 40031 2bnjA 303 7.36e+01 1zt3A 80 7.40e+01 1ikpA 613 7.45e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1i1wA 303 7.46e+01 c.1.8.3 76732 1o6aA 96 7.60e+01 b.139.1.1 92562 1pm4A 119 7.60e+01 b.135.1.1 94891 1i50F 155 7.69e+01 a.143.1.2 61760 1ut9A 609 7.69e+01 a.102.1.2,b.1.18.2 99912,99913 1z4hA 66 7.90e+01 2d1yA 256 8.01e+01 1o54A 277 8.34e+01 c.66.1.13 92482 1qipA 183 8.51e+01 1qipA d.32.1.1 38470 1jsdA 319 8.56e+01 b.19.1.2 63258 1mjc 69 8.59e+01 1mjc b.40.4.5 25319 1t2lA 141 8.59e+01 1vfqA 143 8.80e+01 1sqhA 312 8.83e+01 d.108.1.5 98966 1twfF 155 8.96e+01