# List of top-scoring protein chains for t04-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wnyA 186 8.17e-01 1zk7A 467 1.75e+00 1jchA 551 1.85e+00 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 1ta8A 332 2.48e+00 1pieA 419 2.95e+00 d.14.1.5,d.58.26.7 94706,94707 1riqA 465 3.32e+00 a.203.1.1,d.104.1.1 97516,97517 1eulA 994 4.06e+00 1eulA 1e79D 482 4.49e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1hqsA 423 4.57e+00 1iso c.77.1.1 61154 1xxsA 122 4.79e+00 1ea7A 310 4.89e+00 c.41.1.1 70086 1d2tA 231 4.96e+00 1d2tA a.111.1.1 19052 1wpgA 994 5.16e+00 1ihp 438 5.36e+00 1ihp c.60.1.2 33993 1kblA 873 5.82e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1ile 821 6.11e+00 1ile a.27.1.1,b.51.1.1,c.26.1.1 16924,26889,31591 1u69A 163 6.25e+00 d.32.1.7 107699 1w0dA 337 6.48e+00 1n4kA 381 6.58e+00 a.118.22.1,b.42.6.1 79992,79993 1rg9A 383 6.77e+00 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1qorA 327 7.37e+00 1qorA b.35.1.2,c.2.1.1 24766,29782 1fcjA 322 7.38e+00 1oasA c.79.1.1 35289 2btfA 375 8.26e+00 1yagA c.55.1.1,c.55.1.1 33429,33430 1ex0A 731 8.34e+00 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1evuA 731 8.77e+00 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 2f2hA 773 9.09e+00 1ir3A 306 9.30e+00 1fmk d.144.1.7 41702 1nq7A 244 9.62e+00 a.123.1.1 92047 1nksA 194 1.01e+01 1nksA c.37.1.1 31886 1hyoA 421 1.02e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 2cvzA 289 1.12e+01 1ve5A 311 1.21e+01 1djxB 624 1.24e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 1xwvA 129 1.24e+01 1xipA 388 1.26e+01 1gc0A 398 1.31e+01 c.67.1.3 70168 2b59B 172 1.31e+01 1qvbA 481 1.40e+01 1qvbA c.1.8.4 28983 1d7uA 433 1.41e+01 2dkb c.67.1.4 34439 2a2kA 175 1.45e+01 1d4xG 126 1.46e+01 1d0nA d.109.1.1 59109 1ftrA 296 1.46e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1nnfA 309 1.54e+01 c.94.1.1 85903 2gd9A 189 1.56e+01 1y5iA 1246 1.56e+01 1e4cP 215 1.63e+01 2fua c.74.1.1 34969 1or0B 528 1.68e+01 1v25A 541 1.68e+01 e.23.1.1 108275 1xdwA 331 1.70e+01 1ecfA 504 1.78e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1pixA 587 1.78e+01 c.14.1.4 94708 1nnjA 271 1.80e+01 a.156.1.2,b.113.1.1,g.39.1.8 80669,80670,80671 1xa0A 328 1.87e+01 2gl5A 410 1.88e+01 1hp5A 512 1.89e+01 1hp4A c.1.8.6,d.92.2.1 61113,61114 1y0pA 571 1.90e+01 1jakA 512 1.93e+01 c.1.8.6,d.92.2.1 66472,66473 1iyxA 432 1.96e+01 c.1.11.1,d.54.1.1 83815,83816 1wlsA 328 1.97e+01 1d8cA 723 1.99e+01 1d8cA c.1.13.1 29325 1a1x 108 2.04e+01 1a1x b.63.1.1 27514 2eu9A 355 2.08e+01 1pzxA 289 2.23e+01 c.119.1.1 95484 1gppA 237 2.24e+01 b.86.1.2 76262 2b8nA 429 2.26e+01 1b4vA 504 2.30e+01 1b8sA c.3.1.2,d.16.1.1 30334,37865 1b65A 375 2.31e+01 1b65A d.154.1.1 42020 1a48 306 2.32e+01 1a48 d.143.1.1 41590 1tml 286 2.33e+01 1tml c.6.1.1 30656 1zxmA 400 2.34e+01 1zybA 232 2.46e+01 2d0oA 610 2.47e+01 2gjgA 248 2.50e+01 1tl0D 103 2.53e+01 1u4gA 301 2.67e+01 d.92.1.2 107670 1jvsA 400 2.70e+01 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1ej6B 1275 2.79e+01 i.7.1.1 45968 1sqzA 121 2.80e+01 a.133.1.2 98975 1itcA 516 2.80e+01 b.3.1.1,c.1.8.1 83705,83706 2ck3A 510 2.82e+01 1aisA 182 2.84e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1zwpA 121 2.88e+01 1vhsA 175 2.96e+01 d.108.1.1 100698 1lml 478 3.05e+01 1lml d.92.1.3 40295 2ganA 190 3.21e+01 1tj9A 121 3.34e+01 a.133.1.2 107015 1j1lA 290 3.34e+01 b.82.1.12 90766 1j7gA 144 3.35e+01 c.110.1.1 84130 1pvyA 227 3.35e+01 d.115.1.2 95195 1mvfA 135 3.36e+01 b.1.1.1 85141 1obbA 480 3.37e+01 c.2.1.5,d.162.1.2 86760,86761 1nm1G 125 3.38e+01 d.109.1.1 80653 2furA 209 3.54e+01 1ne7A 289 3.58e+01 c.124.1.1 91833 2b34A 199 3.63e+01 1gt91 357 3.63e+01 1kqfB 294 3.67e+01 d.58.1.5,f.23.22.1 75900,75901 1wdkC 390 3.73e+01 c.95.1.1,c.95.1.1 109258,109259 1ty0A 211 3.80e+01 b.40.2.2,d.15.6.1 107440,107441 1j09A 468 3.82e+01 a.97.1.1,c.26.1.1 77025,77026 2bodX 286 3.83e+01 1ceo 343 3.84e+01 1ceo c.1.8.3 28808 1fohA 664 3.87e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 2g58A 121 3.87e+01 2gvkA 317 3.95e+01 1tk4A 121 4.05e+01 a.133.1.2 107073 2d0iA 333 4.17e+01 1de4C 640 4.19e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1txnA 328 4.22e+01 1gycA 499 4.26e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1b0uA 262 4.28e+01 1b0uA c.37.1.12 32370 1xc1A 309 4.29e+01 c.94.1.1 109543 1vj5A 555 4.29e+01 c.108.1.2,c.69.1.11 100799,100800 1l5oA 356 4.30e+01 c.39.1.1 77711 1nqkA 381 4.33e+01 c.1.16.4 92050 1zcdA 388 4.37e+01 1ikpA 613 4.41e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1e79A 510 4.44e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 1u1hA 765 4.50e+01 c.1.22.2,c.1.22.2 107580,107581 1is1A 185 4.53e+01 d.67.3.1 83704 2amdA 311 4.54e+01 1vgjA 184 4.54e+01 2b4gA 317 4.55e+01 1cnzA 363 4.60e+01 1cnzA c.77.1.1 35061 1se8A 301 4.61e+01 b.40.4.3 105448 1lf6A 684 4.62e+01 a.102.1.5,b.30.5.5 77918,77919 1t1gA 364 4.74e+01 c.41.1.2 106246 2fymA 431 4.77e+01 1ppjA 446 4.77e+01 d.185.1.1,d.185.1.1 104252,104253 1jr7A 311 4.81e+01 b.82.2.3 63255 1kl7A 514 4.83e+01 c.79.1.1 72678 1w6tA 444 4.90e+01 2bogX 286 5.02e+01 1qhxA 178 5.03e+01 1qhsA c.37.1.3 31936 1pbtA 244 5.03e+01 c.124.1.1 94416 1q2wA 308 5.04e+01 b.47.1.4 88355 1uufA 369 5.23e+01 b.35.1.2,c.2.1.1 100006,100007 1vplA 256 5.35e+01 2a5kA 307 5.36e+01 1vjpA 394 5.36e+01 c.2.1.3,d.81.1.3 100828,100829 3vub 101 5.37e+01 3vub b.34.6.1 24613 1mqoA 227 5.46e+01 d.157.1.1 103846 1vjlA 164 5.52e+01 d.257.1.1 100822 1u8fO 335 5.56e+01 1n35A 1267 5.58e+01 e.8.1.4 79935 1tyv 542 5.66e+01 1tyv b.80.1.6 28038 1jdw 423 5.71e+01 1jdw d.126.1.2 41129 1who 96 5.73e+01 1who b.7.3.1 23215 2cpl 165 5.76e+01 2cpl b.62.1.1 27420 1fnuA 221 5.77e+01 3seb b.40.2.2,d.15.6.1 25212,37801 1v5wA 343 5.78e+01 c.37.1.11 108387 1l2uA 245 5.87e+01 c.1.2.3 73516 2biiA 424 5.91e+01 2fsrA 195 5.94e+01 1u1jA 765 5.95e+01 c.1.22.2,c.1.22.2 107590,107591 1ulkA 126 5.95e+01 g.3.1.1,g.3.1.1,g.3.1.1 99559,99560,99561 1jndA 420 5.97e+01 c.1.8.5,d.26.3.1 71757,71758 1cjaA 342 6.09e+01 1cjaA d.144.1.3 41708 1cq3A 233 6.13e+01 1cq3A b.27.1.1 23923 1agjA 242 6.13e+01 1agjA b.47.1.1 25827 1m3sA 186 6.14e+01 c.80.1.3 78573 1bu8A 452 6.16e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1c8uA 285 6.18e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1si6X 282 6.29e+01 1l9kA 305 6.30e+01 c.66.1.25 84569 3prn 289 6.42e+01 3prn f.4.3.1 43761 1o7tA 309 6.44e+01 c.94.1.1 86645 1w1oA 534 6.45e+01 d.58.32.4,d.145.1.1 109071,109072 1nf9A 207 6.48e+01 c.33.1.3 85631 1evyA 366 6.51e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1rypL 212 6.63e+01 d.153.1.4 41880 2c1vA 338 6.68e+01 1lu4A 136 6.72e+01 c.47.1.10 91124 1nr0A 611 6.76e+01 b.69.4.1,b.69.4.1 86078,86079 1omp 370 6.79e+01 4mbp c.94.1.1 35778 1g0uG 252 6.84e+01 d.153.1.4 41952 1ntyA 311 6.87e+01 a.87.1.1,b.55.1.1 103873,103874 1rz2A 254 6.90e+01 b.100.1.1 105130 1y791 680 6.96e+01 2fomB 185 6.99e+01 1ll7A 392 7.02e+01 c.1.8.5,d.26.3.1 78085,78086 1fukA 165 7.02e+01 1fukA c.37.1.19 32409 1o70A 324 7.05e+01 b.118.1.1,b.118.1.1 81115,81116 2pvaA 345 7.13e+01 3pvaA d.153.1.3 41850 1dm5A 315 7.17e+01 1avc a.65.1.1 18186 2ceyA 306 7.19e+01 1fcdA 401 7.20e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1ghpA 258 7.28e+01 1btl e.3.1.1 60520 1m65A 245 7.32e+01 c.6.3.1 84847 1gqiA 708 7.34e+01 c.1.8.10,d.92.2.2 76279,76280 1uiuA 502 7.37e+01 c.94.1.1 99434 1e0tA 470 7.38e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2av4A 162 7.40e+01 1u8vA 490 7.49e+01 1anv 356 7.51e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1gox 370 7.52e+01 1gox c.1.4.1 28607 1d2oA 187 7.63e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1atg 231 7.68e+01 1atg c.94.1.1 35834 1hbnB 442 7.98e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1wf3A 301 8.15e+01 1wdyA 285 8.32e+01 1n4wA 504 8.32e+01 c.3.1.2,d.16.1.1 91676,91677 1te5A 257 8.34e+01 d.153.1.1 106795 1d2kA 392 8.40e+01 1d2kA c.1.8.5,d.26.3.1 29008,38442 2btvA 901 8.43e+01 2btvA e.28.1.1 43376 1f6yA 262 8.46e+01 1f6yA c.1.21.2 29673 1wbpA 397 8.63e+01 1ni4A 365 8.63e+01 c.36.1.11 85728 1idk 359 8.71e+01 1qcxA b.80.1.2 28025 1h8eA 510 8.76e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1zgdA 312 8.83e+01 1eu1A 780 8.86e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1hbq 183 8.87e+01 1aqb b.60.1.1 27078 1mwmA 320 8.89e+01 c.55.1.1,c.55.1.1 79580,79581 2f01A 127 8.90e+01 1lvmA 229 8.92e+01 b.47.1.3 78243