# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjvA 415 3.39e+00 d.3.1.9 108632 1mwmA 320 4.65e+00 c.55.1.1,c.55.1.1 79580,79581 1xn5A 146 4.66e+00 2fpeA 62 5.25e+00 2fsrA 195 5.37e+00 1vjlA 164 7.90e+00 d.257.1.1 100822 1eu3A 210 8.02e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 1ee6A 197 8.95e+00 1ee6A b.80.1.1 28024 1fjgK 129 8.99e+00 1fjfK c.55.4.1 33733 1lshA 1056 1.08e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2a72A 146 1.11e+01 1zxiF 288 1.27e+01 1n62C 288 1.27e+01 d.87.2.1,d.145.1.3 80094,80095 1zxiC 288 1.27e+01 1jsdA 319 1.37e+01 b.19.1.2 63258 1c8uA 285 1.47e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1ojxA 263 1.52e+01 c.1.10.1 93164 1y1oA 203 1.54e+01 1w8sA 263 1.61e+01 1dkuA 317 1.64e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1vbkA 307 1.65e+01 1rqpA 299 1.65e+01 b.141.1.1,c.132.1.1 97754,97755 2ff4A 388 1.71e+01 1mb4A 370 1.71e+01 c.2.1.3,d.81.1.1 78908,78909 1nekA 588 1.81e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1hx0A 496 1.82e+01 b.71.1.1,c.1.8.1 61346,61347 1qj2C 285 1.95e+01 1qj2C 2f9nA 245 2.00e+01 1wsrA 375 2.07e+01 1wggA 96 2.21e+01 1yb3A 175 2.21e+01 1lrzA 426 2.30e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1mjc 69 2.36e+01 1mjc b.40.4.5 25319 1fnoA 417 2.42e+01 d.58.19.1,c.56.5.4 70145,75841 1ikpA 613 2.43e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1gj7B 253 2.47e+01 1c5yB 253 2.56e+01 5ptp 1hpi 71 2.59e+01 1ckuA g.35.1.1 44995 1khoA 370 2.63e+01 a.124.1.1,b.12.1.3 72489,72490 1zkpA 268 2.85e+01 1pm4A 119 3.05e+01 b.135.1.1 94891 1t9fA 187 3.12e+01 b.42.6.1 106710 1qhxA 178 3.48e+01 1qhsA c.37.1.3 31936 1eg9A 449 3.49e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1o7nA 449 3.49e+01 b.33.1.2,d.129.3.3 81162,81163 1xwvA 129 3.49e+01 2sicI 107 3.53e+01 3ssi d.84.1.1 40031 1kgcD 206 3.58e+01 b.1.1.1,b.1.1.2 77384,77385 1vhsA 175 3.59e+01 d.108.1.1 100698 1g94A 448 3.60e+01 b.71.1.1,c.1.8.1 65169,65170 1aqm 453 3.76e+01 1smd b.71.1.1,c.1.8.1 27717,28704 1ro7A 259 3.82e+01 c.130.1.1 97667 1l1jA 239 3.84e+01 b.47.1.1 84516 1zkoA 136 4.02e+01 1om1A 332 4.07e+01 d.144.1.7 93347 1m2rA 327 4.09e+01 d.144.1.7 84760 2covD 104 4.11e+01 1ltoA 245 4.14e+01 b.47.1.2 84707 1rm6A 769 4.21e+01 1ic6A 279 4.26e+01 1gci c.41.1.1 62257 1u69A 163 4.31e+01 d.32.1.7 107699 1vp6A 138 4.32e+01 1smd 496 4.35e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1vplA 256 4.63e+01 1eguA 731 4.64e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2fdiA 211 4.68e+01 1wjnA 97 4.76e+01 1ei5A 520 4.83e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1v88A 130 4.84e+01 b.55.1.1 108423 1n7oA 721 4.89e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1vj0A 380 4.98e+01 b.35.1.2,c.2.1.1 100786,100787 1jsmA 325 5.09e+01 b.19.1.2 63264 1iqaA 160 5.16e+01 b.22.1.1 71274 1i8kA 107 5.21e+01 b.1.1.1 71130 2cw8A 537 5.22e+01 1cf1A 404 5.30e+01 1cf1A b.1.18.11,b.1.18.11 21907,21908 1yavA 159 5.34e+01 1sqhA 312 5.47e+01 d.108.1.5 98966 1vquA 374 5.65e+01 1wwzA 159 5.69e+01 1e79H 146 5.72e+01 1e79H a.2.10.1,b.93.1.1 15721,28438 1yr4A 237 5.91e+01 2f91A 237 5.91e+01 1qwzA 235 6.00e+01 b.100.1.1 96510 2anwA 241 6.11e+01 1bmv2 374 6.18e+01 1bmv2 1d4tA 104 6.37e+01 1d4tA d.93.1.1 40537 2erfA 209 6.40e+01 1cseE 274 6.42e+01 1gci c.41.1.1 32481 1m6eX 359 6.52e+01 c.66.1.35 91188 3c2c 112 6.54e+01 1ycc a.3.1.1 15885 1jovA 270 6.60e+01 b.30.5.7 84192 1o6aA 96 6.63e+01 b.139.1.1 92562 1ks8A 433 6.73e+01 a.102.1.2 77519 2anyA 241 6.87e+01 1h8eH 146 7.02e+01 1e79H b.93.1.1 60757 1v33A 366 7.10e+01 d.264.1.1 100278 1s55A 156 7.13e+01 2ai4A 119 7.13e+01 1vi4A 174 7.18e+01 c.8.7.1 100731 1yfsA 465 7.34e+01 1yifA 533 7.35e+01 1agqA 135 7.38e+01 1agqA g.17.1.2 44789 1riqA 465 7.50e+01 a.203.1.1,d.104.1.1 97516,97517 1q38A 89 7.52e+01 b.1.2.1 95663 1g71A 347 7.52e+01 1g71A d.264.1.1 43268 1go7P 462 7.63e+01 b.80.7.1,d.92.1.6 76245,76246 1n08A 163 7.66e+01 b.43.5.1 79730 1php 394 7.75e+01 16pk c.86.1.1 35452 1v6pA 62 7.75e+01 1w18A 493 7.77e+01 1k7iA 479 7.77e+01 b.80.7.1,d.92.1.6 77281,77282 1gy7A 125 8.05e+01 d.17.4.2 70738 1tl2A 236 8.10e+01 1tl2A b.67.1.1 27541 1wruA 379 8.13e+01 1sup 275 8.18e+01 1gci c.41.1.1 32510 1z64A 26 8.23e+01 1ym0A 238 8.32e+01 1tr8A 102 8.45e+01 1s8iA 121 8.50e+01 a.133.1.2 98735 1hh8A 213 8.51e+01 1e96B a.118.8.1 61042 1g4wR 383 8.52e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 2bs9A 503 8.54e+01 1lw6E 281 8.59e+01 c.41.1.1 74293 1rds 105 8.60e+01 9rnt d.1.1.4 36236 1jb7B 260 8.61e+01 1otcB b.40.4.3 62839 1ahsA 126 8.68e+01 1ahsA b.19.1.1 23794 1pgl2 370 8.72e+01 1wz9A 375 8.73e+01 2sga 181 8.75e+01 1qq4A b.47.1.1 25808 1wm5A 208 8.76e+01 1tygB 87 8.82e+01 d.15.3.2 107455 1mojA 182 8.93e+01 a.25.1.1 91367 1tjoA 182 8.93e+01 2bz6H 254 8.97e+01 1sf9A 128 8.99e+01 b.34.15.1 98831