# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q3eA 207 1.04e+00 b.82.3.2 95669 2b43A 526 1.67e+00 2fpeA 62 4.13e+00 1o6aA 96 5.08e+00 b.139.1.1 92562 4ubpA 101 5.76e+00 1ubpA d.8.1.1 37352 1d4tA 104 6.29e+00 1d4tA d.93.1.1 40537 1hpi 71 7.39e+00 1ckuA g.35.1.1 44995 1e6bA 221 9.15e+00 1e6bA a.45.1.1,c.47.1.5 59294,59295 1aiw 62 9.79e+00 1aiw b.72.2.1 27808 1d0dA 60 9.85e+00 1kigI g.8.1.2 44566 1sh0A 510 1.25e+01 e.8.1.4 98876 1o6sB 105 1.50e+01 b.1.6.1 81096 2bhvA 246 1.52e+01 1wgoA 123 1.63e+01 1zt3A 80 1.74e+01 1xn5A 146 2.23e+01 1vf6C 72 2.29e+01 a.194.1.1 100602 1agqA 135 2.32e+01 1agqA g.17.1.2 44789 1gtzA 156 2.35e+01 c.23.13.1 70539 1y7pA 223 2.44e+01 1o0pA 104 2.68e+01 d.58.7.1 86535 1vp6A 138 2.71e+01 1vehA 92 2.87e+01 1mbe 53 2.98e+01 1mbe a.4.1.3 16038 2ct7A 86 3.07e+01 1qipA 183 3.14e+01 1qipA d.32.1.1 38470 2sicI 107 3.15e+01 3ssi d.84.1.1 40031 1n3bA 216 3.24e+01 c.37.1.1 79959 1yrvA 169 3.32e+01 1d0iA 156 3.33e+01 2dhqA c.23.13.1 31383 1l0lK 56 3.54e+01 f.23.15.1 84497 1vjqA 79 3.61e+01 k.43.1.1 100830 1im3D 95 3.63e+01 1im3D b.1.18.5 62568 1wjnA 97 3.68e+01 1dcoA 104 3.69e+01 1dcpA d.74.1.1 39680 1pg4A 652 3.76e+01 e.23.1.1 88067 1eaiC 61 3.80e+01 1eaiC g.22.1.1 44894 2ctoA 93 3.82e+01 1lktA 104 3.85e+01 1lktA b.90.1.1 28398 1y4mA 53 3.90e+01 1gyxA 76 4.13e+01 d.80.1.1 76387 1zroA 602 4.14e+01 1vk9A 151 4.27e+01 c.139.1.1 108640 1vgjA 184 4.27e+01 1mof 55 4.33e+01 1mof h.3.2.1 46324 2ai4A 119 4.41e+01 1ejxA 100 4.45e+01 d.8.1.1 83182 1mjc 69 4.54e+01 1mjc b.40.4.5 25319 1dkuA 317 4.56e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 2g5cA 281 4.67e+01 1bxyA 60 4.77e+01 1bxyA d.59.1.1 39525 1kbjA 412 4.80e+01 c.1.4.1 72280 1nciA 110 5.02e+01 1edhA b.1.6.1 22191 1j27A 102 5.33e+01 d.58.50.1 90778 1gy7A 125 5.38e+01 d.17.4.2 70738 1giqA 413 5.59e+01 d.166.1.1,d.166.1.1 76224,76225 1q16A 1247 5.65e+01 b.52.2.2,c.81.1.1 95546,95547 1weuA 91 5.70e+01 1wggA 96 5.82e+01 1yewB 247 5.94e+01 1y5iA 1246 5.95e+01 1uqvA 85 6.00e+01 a.60.1.2 99798 1fjnA 39 6.23e+01 1fjnA g.3.7.3 44171 1efnB 152 6.51e+01 1efnB d.102.1.1 40699 1lldA 319 6.81e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 3ullA 132 6.86e+01 3ullA b.40.4.3 25282 2aheA 267 7.00e+01 1db3A 372 7.04e+01 1db3A c.2.1.2 29813 1r5eA 115 7.09e+01 2a3qA 170 7.09e+01 1gln 468 7.15e+01 1gln a.97.1.1,c.26.1.1 18752,31588 1m5iA 125 7.34e+01 h.4.13.1 78648 1bcpD 110 7.43e+01 1bcpD b.40.2.1 25132 1qxfA 66 7.48e+01 g.41.8.4 96527 1g2cB 43 7.61e+01 1g2cB 2d1pC 95 7.66e+01 1guuA 52 7.70e+01 a.4.1.3 83332 1qd9A 124 7.80e+01 1qu9A d.79.1.1 39758 1k3yA 221 7.84e+01 a.45.1.1,c.47.1.5 77245,77246 2bcoA 350 7.92e+01 1o54A 277 7.94e+01 c.66.1.13 92482 1xniA 118 7.96e+01 1ssfA 156 8.04e+01 b.34.9.1,b.34.9.1 105982,105983 1nwaA 203 8.05e+01 d.58.28.1 86295 1vyoA 128 8.16e+01 1o97D 320 8.16e+01 c.26.2.3,c.31.1.2 81233,81234 1q38A 89 8.24e+01 b.1.2.1 95663 2c4wA 176 8.29e+01 1n9dA 199 8.29e+01 a.26.1.1 85464 1rsoB 56 8.46e+01 a.194.1.1 97812 1twfF 155 8.83e+01 1ks8A 433 8.85e+01 a.102.1.2 77519