Best Alignments for T0289

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bcoA/T0289-2bcoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bcoA/T0289-2bcoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5345e+004.63e-06
1vjvA/T0289-1vjvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjvA/T0289-1vjvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6377e+008.46e-06 d.3.1.9
1eu3A/T0289-1eu3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1eu3A/T0289-1eu3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5770e+015.54e-03 1an8 b.40.2.2
d.15.6.1
2fpeA/T0289-2fpeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fpeA/T0289-2fpeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6361e+011.76e+00
1mjc/T0289-1mjc-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mjc/T0289-1mjc-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7570e+014.83e-03 1mjc b.40.4.5
1cv8/T0289-1cv8-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cv8/T0289-1cv8-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8318e+012.46e-07 1cv8 d.3.1.1
1o6aA/T0289-1o6aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o6aA/T0289-1o6aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0260e+011.09e-02 b.139.1.1
1mwmA/T0289-1mwmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mwmA/T0289-1mwmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0680e+012.43e+01 c.55.1.1
c.55.1.1
1n7oA/T0289-1n7oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1n7oA/T0289-1n7oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0973e+016.09e-05 a.102.3.2
b.24.1.1
b.30.5.2
1q6uA/T0289-1q6uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1q6uA/T0289-1q6uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1009e+012.05e-04 d.26.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001