# List of top-scoring protein chains for T0289.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rflA 172 1.98e+00 c.37.1.8 97384 2b43A 526 5.86e+00 2a72A 146 7.49e+00 1sh0A 510 9.87e+00 e.8.1.4 98876 1uqrA 154 1.04e+01 c.23.13.1 99779 1ytkA 398 1.14e+01 1giqA 413 1.19e+01 d.166.1.1,d.166.1.1 76224,76225 1wi3A 71 1.35e+01 1zagA 274 1.48e+01 1agdA b.1.1.2,d.19.1.1 20851,38315 1q3eA 207 1.93e+01 b.82.3.2 95669 1t7vA 278 1.98e+01 1rqjA 299 2.04e+01 a.128.1.1 97744 1rqiA 300 2.05e+01 a.128.1.1 97742 1vbkA 307 2.09e+01 1o9rA 162 2.34e+01 a.25.1.1 86706 1eoqA 96 2.34e+01 1d1dA a.28.3.1 16959 1tux 301 2.35e+01 1taxA c.1.8.3 28907 2afrA 231 2.47e+01 1x5aA 107 2.89e+01 2g5cA 281 3.19e+01 1i1wA 303 3.31e+01 c.1.8.3 76732 2bnjA 303 3.32e+01 1mb4A 370 3.40e+01 c.2.1.3,d.81.1.1 78908,78909 1ks8A 433 3.41e+01 a.102.1.2 77519 1gtzA 156 3.52e+01 c.23.13.1 70539 1mqhA 263 3.75e+01 c.94.1.1 91397 2anjA 263 3.82e+01 1wwzA 159 3.82e+01 1vlqA 337 3.83e+01 c.69.1.25 108848 1k6aA 303 3.88e+01 c.1.8.3 72081 1gu1A 156 4.13e+01 c.23.13.1 70563 1mqdA 261 4.24e+01 c.94.1.1 85049 1p1oA 263 4.27e+01 c.94.1.1 87699 1m5dA 263 4.27e+01 c.94.1.1 78641 1lbcA 263 4.29e+01 c.94.1.1 73805 1mqiA 263 4.30e+01 c.94.1.1 91398 2bt4A 157 4.31e+01 1lbbA 263 4.32e+01 c.94.1.1 73804 2ech 50 4.39e+01 1fvl g.20.1.1 44879 1p1wA 263 4.62e+01 c.94.1.1 87713 1lb8A 263 4.66e+01 c.94.1.1 73800 4ubpA 101 4.67e+01 1ubpA d.8.1.1 37352 1ffvA 163 4.69e+01 1qj2A a.56.1.1,d.15.4.2 17915,37700 1ie7A 100 4.69e+01 1ubpA d.8.1.1 62313 1ro3A 49 4.75e+01 g.20.1.1 97666 1dwaM 499 5.49e+01 1e70M c.1.8.4 28928 1to0A 167 5.49e+01 c.116.1.3 107153 1e4mM 501 5.52e+01 1e70M c.1.8.4 59226 1lxjA 104 5.56e+01 d.58.48.1 84736 2ljrA 244 5.56e+01 1ljrA a.45.1.1,c.47.1.5 17709,33003 1udzA 182 5.67e+01 b.51.1.1 99239 1wnyA 186 5.73e+01 1myr 501 5.80e+01 1e70M c.1.8.4 28925 1z1vA 80 6.06e+01 1lxiA 139 6.10e+01 g.17.1.2 84735 1wk8A 194 6.15e+01 1ftkA 279 6.17e+01 1gr2A c.94.1.1 35819 2ftzA 284 6.27e+01 1uqvA 85 6.47e+01 a.60.1.2 99798 1mk4A 157 6.77e+01 d.108.1.1 84979 1vk0A 206 6.83e+01 c.55.3.5 100839 2gj1A 583 7.33e+01 1k46A 136 7.38e+01 d.195.1.1 68125 1o0pA 104 7.52e+01 d.58.7.1 86535 2gjmA 583 7.66e+01 2forA 323 7.84e+01 1h0cA 392 7.87e+01 c.67.1.3 83424 1m6eX 359 7.92e+01 c.66.1.35 91188 1hufA 140 7.93e+01 1hufA d.195.1.1 61272 2b8nA 429 8.02e+01 1jt8A 102 8.03e+01 b.40.4.5 63279 2bv1A 145 8.52e+01