# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjvA 415 2.08e+00 d.3.1.9 108632 2fsrA 195 4.71e+00 1q8rA 120 4.92e+00 d.79.6.1 96225 1fjgK 129 5.19e+00 1fjfK c.55.4.1 33733 2fpeA 62 5.67e+00 1lshA 1056 6.28e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1qhxA 178 7.32e+00 1qhsA c.37.1.3 31936 1zkoA 136 7.75e+00 1bf2 750 8.02e+00 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1zkpA 268 8.19e+00 1eu3A 210 8.57e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 1xn5A 146 8.68e+00 1r0rE 274 8.73e+00 c.41.1.1 96735 2a72A 146 9.07e+00 1gj7B 253 1.03e+01 1ze3D 125 1.06e+01 1vjlA 164 1.11e+01 d.257.1.1 100822 1ee6A 197 1.11e+01 1ee6A b.80.1.1 28024 3tss 194 1.16e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1wkaA 147 1.18e+01 1vdwA 254 1.24e+01 e.7.1.1 100569 2fdiA 211 1.29e+01 1c1yB 77 1.30e+01 1c1yB d.15.1.5 37618 1uliA 460 1.31e+01 b.33.1.2,d.129.3.3 107921,107922 1c9oA 66 1.36e+01 1mjc b.40.4.5 25325 1kcqA 104 1.41e+01 d.109.1.1 68449 2ff4A 388 1.41e+01 1to2E 281 1.44e+01 1mgrA 99 1.46e+01 d.1.1.2 79106 1khoA 370 1.52e+01 a.124.1.1,b.12.1.3 72489,72490 1mwmA 320 1.55e+01 c.55.1.1,c.55.1.1 79580,79581 1u69A 163 1.59e+01 d.32.1.7 107699 1nz0A 118 1.59e+01 d.14.1.2 86433 1l1oC 181 1.60e+01 b.40.4.3 73480 1sawA 225 1.69e+01 1vbkA 307 1.70e+01 1o6aA 96 1.72e+01 b.139.1.1 92562 1sv6A 269 1.87e+01 d.177.1.1 106043 1t9fA 187 1.99e+01 b.42.6.1 106710 1yt5A 258 2.04e+01 2f9nA 245 2.09e+01 1ro7A 259 2.10e+01 c.130.1.1 97667 1v6pA 62 2.12e+01 1xttA 216 2.14e+01 1g31A 111 2.24e+01 1g31A b.35.1.1 24656 1ne7A 289 2.31e+01 c.124.1.1 91833 2cw8A 537 2.35e+01 1t1gA 364 2.47e+01 c.41.1.2 106246 1os8A 223 2.57e+01 b.47.1.1 93481 4dpvZ 584 2.59e+01 2cas b.121.5.2 23377 1oacA 727 2.65e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1yqtA 538 2.67e+01 1q6hA 224 2.69e+01 d.26.1.1 95975 1jsdA 319 2.72e+01 b.19.1.2 63258 1ymiA 334 2.81e+01 1vplA 256 2.90e+01 2sicI 107 2.92e+01 3ssi d.84.1.1 40031 1wruA 379 2.95e+01 1y1oA 203 2.96e+01 1z64A 26 2.99e+01 1z7gA 217 3.00e+01 1bm8 99 3.01e+01 1bm8 d.34.1.1 38528 1t3yA 141 3.01e+01 1n7oA 721 3.07e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1q6uA 245 3.09e+01 d.26.1.1 95998 1c8uA 285 3.17e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1g4iA 123 3.18e+01 1poa a.133.1.2 60241 1ym0A 238 3.20e+01 2anyA 241 3.22e+01 1te5A 257 3.29e+01 d.153.1.1 106795 1rqpA 299 3.34e+01 b.141.1.1,c.132.1.1 97754,97755 1ic6A 279 3.39e+01 1gci c.41.1.1 62257 1c7sA 858 3.43e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1o54A 277 3.53e+01 c.66.1.13 92482 1xwvA 129 3.53e+01 1i8kA 107 3.54e+01 b.1.1.1 71130 1hpi 71 3.57e+01 1ckuA g.35.1.1 44995 1snrA 341 3.58e+01 b.6.1.3,b.6.1.3 105823,105824 1pylA 97 3.60e+01 d.1.1.2 104391 1php 394 3.63e+01 16pk c.86.1.1 35452 1ev7A 317 3.70e+01 1ev7B c.52.1.9 33315 1ogoX 574 3.71e+01 b.133.1.1,b.80.1.10 92925,92926 1szoA 257 3.71e+01 c.14.1.3 106164 1ikpA 613 3.77e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1tygB 87 3.78e+01 d.15.3.2 107455 1svy 114 3.87e+01 1svy d.109.1.1 40831 1a3aA 148 4.09e+01 1a3aA d.112.1.1 40917 1mqiA 263 4.12e+01 c.94.1.1 91398 2mcm 112 4.15e+01 2mcm b.1.7.1 22207 1vr9A 213 4.20e+01 1a8y 367 4.24e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1hn4A 131 4.24e+01 a.133.1.2 65893 1fsgA 233 4.44e+01 1qk3A c.61.1.1 34029 1vhsA 175 4.47e+01 d.108.1.1 100698 1tjoA 182 4.48e+01 1d2tA 231 4.49e+01 1d2tA a.111.1.1 19052 1yg9A 330 4.51e+01 1pm4A 119 4.52e+01 b.135.1.1 94891 1x13A 401 4.56e+01 1gci 269 4.70e+01 1gci c.41.1.1 32503 1inlA 296 4.79e+01 c.66.1.17 66220 1ahsA 126 4.80e+01 1ahsA b.19.1.1 23794 2sga 181 4.81e+01 1qq4A b.47.1.1 25808 1o7nA 449 4.87e+01 b.33.1.2,d.129.3.3 81162,81163 1s5aA 150 4.88e+01 d.17.4.10 98525 1dmuA 299 4.95e+01 1dmuA c.52.1.4 33294 2bx6A 350 4.95e+01 1dkuA 317 4.99e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1aiw 62 4.99e+01 1aiw b.72.2.1 27808 1tl2A 236 5.06e+01 1tl2A b.67.1.1 27541 3c2c 112 5.08e+01 1ycc a.3.1.1 15885 1tlyA 278 5.09e+01 f.4.6.1 107143 1m1zA 513 5.13e+01 c.26.2.1,d.153.1.1 78457,78458 2fikA 287 5.39e+01 1w8sA 263 5.50e+01 4ubpA 101 5.54e+01 1ubpA d.8.1.1 37352 1eaxA 241 5.55e+01 b.47.1.2 64889 1s8iA 121 5.65e+01 a.133.1.2 98735 1n2aA 201 5.68e+01 a.45.1.1,c.47.1.5 91553,91554 1kjvA 284 5.69e+01 b.1.1.2,d.19.1.1 77421,77422 1q5dA 419 5.70e+01 a.104.1.1 95891 1f53A 84 5.79e+01 1f53A b.11.1.4 23632 1ijaA 148 5.89e+01 1ijaA b.100.1.1 62484 2ai4A 119 6.02e+01 1n62C 288 6.05e+01 d.87.2.1,d.145.1.3 80094,80095 1zbxB 141 6.20e+01 1r4xA 275 6.21e+01 b.1.10.3,d.105.1.2 97054,97055 1vkyA 347 6.22e+01 e.53.1.1 108696 1sqhA 312 6.28e+01 d.108.1.5 98966 1b7yA 350 6.29e+01 1pysA d.104.1.1 40776 1yozA 116 6.30e+01 2bg9A 370 6.32e+01 1zvkA 358 6.33e+01 1pne 140 6.39e+01 1pne d.110.1.1 40866 1h2wA 710 6.41e+01 b.69.7.1,c.69.1.4 76596,76597 1rm6A 769 6.45e+01 1nqzA 194 6.50e+01 d.113.1.1 86077 1v5vA 401 6.54e+01 2a1xA 308 6.62e+01 1mfgA 95 6.65e+01 b.36.1.1 79043 1el6A 219 6.77e+01 1el6B d.182.1.1 42606 1dekA 241 6.80e+01 1dekA c.37.1.1 31842 1ddjA 247 6.93e+01 5ptp b.47.1.2 26362 2bwqA 129 6.93e+01 1wsrA 375 7.06e+01 1ywfA 296 7.09e+01 1lr7A 74 7.11e+01 g.3.11.3,g.68.1.1 84679,84680 1k3sA 113 7.20e+01 d.198.1.1 68120 1yfnA 118 7.20e+01 1kgcD 206 7.26e+01 b.1.1.1,b.1.1.2 77384,77385 2cxaA 256 7.28e+01 1ve4A 206 7.32e+01 1uhaA 82 7.32e+01 g.3.1.1,g.3.1.1 99395,99396 1zdzA 302 7.33e+01 1gkpA 458 7.39e+01 b.92.1.3,c.1.9.6 70231,70232 1wosA 364 7.48e+01 b.44.2.1,d.250.1.1 109468,109469 1tdhA 364 7.48e+01 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 1wmqA 147 7.48e+01 2g0cA 76 7.51e+01 2b3wA 168 7.54e+01 1vcdA 126 7.58e+01 1fs5A 266 7.61e+01 c.124.1.1 65044 2gd9A 189 7.70e+01 1o1yA 239 7.72e+01 c.23.16.1 86554 1jovA 270 7.75e+01 b.30.5.7 84192 1p8xA 344 7.84e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1oruA 195 7.85e+01 b.58.1.2 93464 1t2wA 145 7.93e+01 b.100.1.1 106289 1gcqC 70 7.99e+01 1gcpA b.34.2.1 60436 1sz7A 200 8.00e+01 1yavA 159 8.05e+01 2f5yA 91 8.17e+01 1yhtA 367 8.22e+01 1udzA 182 8.23e+01 b.51.1.1 99239 1ri9A 102 8.42e+01 b.34.2.1 97506 1p0hA 318 8.53e+01 d.108.1.1 93866 1g4wR 383 8.54e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1wnyA 186 8.64e+01 1lxjA 104 8.70e+01 d.58.48.1 84736 1tcvA 287 8.74e+01 1ir21 140 8.75e+01 1ei5A 520 8.75e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1fepA 724 8.81e+01 1fepA f.4.3.3 43808 1rcqA 357 8.82e+01 b.49.2.2,c.1.6.1 104882,104883 1hh8A 213 8.89e+01 1e96B a.118.8.1 61042 1nwpA 128 8.91e+01 1nwpA b.6.1.1 23011 1t61C 227 8.96e+01 d.169.1.6,d.169.1.6 106533,106534