# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 4ubpA 101 2.03e+00 1ubpA d.8.1.1 37352 1qbjA 81 4.97e+00 1qbjA a.4.5.19 16155 1w8sA 263 5.37e+00 2fpeA 62 6.53e+00 1sh0A 510 7.42e+00 e.8.1.4 98876 2fulA 178 8.49e+00 1dcoA 104 9.63e+00 1dcpA d.74.1.1 39680 1udzA 182 9.94e+00 b.51.1.1 99239 1w07A 659 1.00e+01 1ev7A 317 1.02e+01 1ev7B c.52.1.9 33315 1om1A 332 1.08e+01 d.144.1.7 93347 1wnyA 186 1.11e+01 1ycsB 239 1.19e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 2ai4A 119 1.47e+01 1mk4A 157 1.50e+01 d.108.1.1 84979 1vgjA 184 1.55e+01 1rqjA 299 1.61e+01 a.128.1.1 97744 2bnxA 386 1.71e+01 2blfB 81 1.71e+01 2ayuA 417 1.73e+01 1whi 122 1.77e+01 1whi b.39.1.1 24810 1giqA 413 1.92e+01 d.166.1.1,d.166.1.1 76224,76225 1ejxA 100 1.94e+01 d.8.1.1 83182 1ic6A 279 1.95e+01 1gci c.41.1.1 62257 1uqvA 85 1.98e+01 a.60.1.2 99798 1edg 380 2.02e+01 1edg c.1.8.3 28807 1reqA 727 2.16e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1mqiA 263 2.19e+01 c.94.1.1 91398 1ei5A 520 2.24e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1yuzA 202 2.28e+01 1vbkA 307 2.29e+01 1rewA 114 2.38e+01 g.17.1.2 97334 1tygB 87 2.45e+01 d.15.3.2 107455 1vcc 77 2.54e+01 1vcc d.121.1.1 41092 1fs5A 266 2.58e+01 c.124.1.1 65044 2b8nA 429 2.62e+01 1wh0A 134 2.65e+01 1hpi 71 2.69e+01 1ckuA g.35.1.1 44995 1uqrA 154 2.79e+01 c.23.13.1 99779 1wkrA 340 2.80e+01 b.50.1.2 109395 2g7jA 124 2.87e+01 1lrzA 426 2.88e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1ne7A 289 2.95e+01 c.124.1.1 91833 2cxxA 190 3.12e+01 1hfoA 113 3.23e+01 d.80.1.3 61006 1vjvA 415 3.29e+01 d.3.1.9 108632 1n67A 359 3.34e+01 b.2.3.4,b.2.3.4 85354,85355 3ullA 132 3.38e+01 3ullA b.40.4.3 25282 1fjgK 129 3.45e+01 1fjfK c.55.4.1 33733 1nbwA 607 3.55e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1bm9A 122 3.62e+01 1bm9A a.4.5.7 16116 1t1gA 364 3.83e+01 c.41.1.2 106246 2gd9A 189 4.01e+01 1sv6A 269 4.21e+01 d.177.1.1 106043 1z4hA 66 4.41e+01 2crvA 120 4.44e+01 1qysA 106 4.51e+01 k.41.1.1 96603 1ymiA 334 4.66e+01 1xjuA 163 4.67e+01 1lv7A 257 4.73e+01 c.37.1.20 78232 2c78A 405 4.74e+01 1yb5A 351 4.90e+01 1ut9A 609 4.92e+01 a.102.1.2,b.1.18.2 99912,99913 1m65A 245 4.92e+01 c.6.3.1 84847 1aiw 62 4.96e+01 1aiw b.72.2.1 27808 1sqhA 312 5.03e+01 d.108.1.5 98966 1k3sA 113 5.09e+01 d.198.1.1 68120 1xn5A 146 5.70e+01 2a4vA 159 5.78e+01 1nbaA 264 5.82e+01 1nbaA c.33.1.3 31753 1zkoA 136 5.84e+01 1hufA 140 5.88e+01 1hufA d.195.1.1 61272 1op3H 225 5.96e+01 b.1.1.1,b.1.1.2 87208,87209 1r5eA 115 6.05e+01 1gtzA 156 6.16e+01 c.23.13.1 70539 8dfr 189 6.16e+01 1aoeA c.71.1.1 34895 1kexA 155 6.18e+01 b.18.1.2 77350 1jmvA 141 6.28e+01 c.26.2.4 66897 1d4tA 104 6.29e+01 1d4tA d.93.1.1 40537 1i1wA 303 6.32e+01 c.1.8.3 76732 1fjnA 39 6.40e+01 1fjnA g.3.7.3 44171 2etxA 209 6.55e+01 1pm4A 119 6.89e+01 b.135.1.1 94891 2ckiA 262 7.04e+01 1s55A 156 7.08e+01 1ikpA 613 7.20e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2gxfA 142 7.40e+01 1sb8A 352 7.46e+01 c.2.1.2 105410 1zt3A 80 7.50e+01 830cA 168 7.53e+01 1ck7A d.92.1.11 40400 1oznA 285 7.56e+01 c.10.2.7 87621 1d4aA 273 7.60e+01 1d4aA c.23.5.3 31219 1y9aA 360 7.66e+01 2sicI 107 7.76e+01 3ssi d.84.1.1 40031 1vp6A 138 7.76e+01 1uedA 406 7.77e+01 a.104.1.1 99256 1qipA 183 7.88e+01 1qipA d.32.1.1 38470 1j79A 347 8.00e+01 1j79A c.1.9.4 62675 1gcqC 70 8.19e+01 1gcpA b.34.2.1 60436 2d1yA 256 8.49e+01 2sga 181 8.50e+01 1qq4A b.47.1.1 25808 1sq5A 308 8.58e+01 c.37.1.6 105882 1eu3A 210 8.64e+01 1an8 b.40.2.2,d.15.6.1 25206,37795 1iwlA 182 8.82e+01 b.125.1.1 83757 1f0lA 535 8.85e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1bec 238 8.99e+01 1bec b.1.1.1,b.1.1.2 20627,21561