# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjvA 415 1.28e+00 d.3.1.9 108632 1eu3A 210 1.61e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 1khoA 370 3.40e+00 a.124.1.1,b.12.1.3 72489,72490 1xn5A 146 4.21e+00 1mwmA 320 4.78e+00 c.55.1.1,c.55.1.1 79580,79581 2fsrA 195 5.16e+00 1lshA 1056 5.39e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2fpeA 62 5.58e+00 1ee6A 197 8.88e+00 1ee6A b.80.1.1 28024 1vjlA 164 9.13e+00 d.257.1.1 100822 1hx0A 496 1.06e+01 b.71.1.1,c.1.8.1 61346,61347 2ff4A 388 1.12e+01 1jsdA 319 1.17e+01 b.19.1.2 63258 1l1oC 181 1.18e+01 b.40.4.3 73480 1vbkA 307 1.19e+01 3tss 194 1.27e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1rm6A 769 1.28e+01 2a72A 146 1.30e+01 1y1oA 203 1.38e+01 1n62C 288 1.39e+01 d.87.2.1,d.145.1.3 80094,80095 1rqpA 299 1.51e+01 b.141.1.1,c.132.1.1 97754,97755 1w8sA 263 1.51e+01 1vhsA 175 1.57e+01 d.108.1.1 100698 1fjgK 129 1.72e+01 1fjfK c.55.4.1 33733 1dkuA 317 1.76e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1c8uA 285 1.77e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 2f9nA 245 1.78e+01 1yb3A 175 2.03e+01 2fdiA 211 2.03e+01 1rz1A 161 2.15e+01 b.45.1.2 98124 1t9fA 187 2.18e+01 b.42.6.1 106710 1ikpA 613 2.25e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1g94A 448 2.26e+01 b.71.1.1,c.1.8.1 65169,65170 1tlyA 278 2.38e+01 f.4.6.1 107143 1pm4A 119 2.39e+01 b.135.1.1 94891 1gj7B 253 2.44e+01 1brwA 433 2.49e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1zkpA 268 2.51e+01 1wsrA 375 2.55e+01 1hpi 71 2.61e+01 1ckuA g.35.1.1 44995 1nz0A 118 2.62e+01 d.14.1.2 86433 1ne7A 289 2.65e+01 c.124.1.1 91833 1o7nA 449 3.10e+01 b.33.1.2,d.129.3.3 81162,81163 1d4tA 104 3.11e+01 1d4tA d.93.1.1 40537 2cw8A 537 3.13e+01 1smd 496 3.14e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1zkoA 136 3.22e+01 1c7sA 858 3.29e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1mgrA 99 3.30e+01 d.1.1.2 79106 1q8rA 120 3.35e+01 d.79.6.1 96225 1kgcD 206 3.39e+01 b.1.1.1,b.1.1.2 77384,77385 1ze3D 125 3.42e+01 1qhxA 178 3.44e+01 1qhsA c.37.1.3 31936 1s55A 156 3.45e+01 2sicI 107 3.55e+01 3ssi d.84.1.1 40031 1om1A 332 3.62e+01 d.144.1.7 93347 1wwzA 159 3.63e+01 1vplA 256 3.67e+01 1yifA 533 3.83e+01 2covD 104 3.84e+01 1pylA 97 3.91e+01 d.1.1.2 104391 1vdwA 254 4.10e+01 e.7.1.1 100569 1rds 105 4.12e+01 9rnt d.1.1.4 36236 1inlA 296 4.12e+01 c.66.1.17 66220 1yfsA 465 4.15e+01 1ahsA 126 4.15e+01 1ahsA b.19.1.1 23794 1n7oA 721 4.15e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1sawA 225 4.26e+01 1sqhA 312 4.31e+01 d.108.1.5 98966 1xwvA 129 4.32e+01 1vp6A 138 4.33e+01 1ic6A 279 4.35e+01 1gci c.41.1.1 62257 1lniA 96 4.47e+01 d.1.1.2 74046 1ro7A 259 4.53e+01 c.130.1.1 97667 1ei5A 520 4.69e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1k3bA 119 4.69e+01 b.61.5.1 72016 1jsmA 325 4.72e+01 b.19.1.2 63264 1vgjA 184 4.78e+01 1ks8A 433 4.81e+01 a.102.1.2 77519 1q6uA 245 4.82e+01 d.26.1.1 95998 2f91A 237 4.97e+01 1w18A 493 5.13e+01 1k8kD 300 5.20e+01 d.198.2.1,d.198.2.1 68309,68310 1yqtA 538 5.26e+01 1i8kA 107 5.37e+01 b.1.1.1 71130 1z7gA 217 5.41e+01 1qwzA 235 5.59e+01 b.100.1.1 96510 2c1iA 431 5.62e+01 3c2c 112 5.71e+01 1ycc a.3.1.1 15885 1fepA 724 5.73e+01 1fepA f.4.3.3 43808 1h8eH 146 5.87e+01 1e79H b.93.1.1 60757 1jovA 270 5.94e+01 b.30.5.7 84192 1o6aA 96 5.95e+01 b.139.1.1 92562 1u69A 163 6.08e+01 d.32.1.7 107699 2ai4A 119 6.09e+01 1vj0A 380 6.28e+01 b.35.1.2,c.2.1.1 100786,100787 1wruA 379 6.33e+01 1t7vA 278 6.33e+01 1vi4A 174 6.37e+01 c.8.7.1 100731 1hh8A 213 6.43e+01 1e96B a.118.8.1 61042 1o1yA 239 6.50e+01 c.23.16.1 86554 1umzA 278 6.50e+01 b.29.1.2 99639 2fvgA 340 6.61e+01 1y4wA 518 6.62e+01 1uliA 460 6.64e+01 b.33.1.2,d.129.3.3 107921,107922 1yavA 159 6.67e+01 1umgA 362 6.68e+01 d.280.1.1 107956 1k7iA 479 6.71e+01 b.80.7.1,d.92.1.6 77281,77282 1aiw 62 6.83e+01 1aiw b.72.2.1 27808 1dekA 241 6.86e+01 1dekA c.37.1.1 31842 1pgl2 370 6.95e+01 1uqrA 154 6.96e+01 c.23.13.1 99779 1tygB 87 7.03e+01 d.15.3.2 107455 1w66A 232 7.38e+01 2b1xA 470 7.38e+01 1s68A 249 7.39e+01 d.142.2.4 98591 1msk 331 7.40e+01 1msk d.173.1.1 42495 1ymiA 334 7.42e+01 1e6bA 221 7.44e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1m6eX 359 7.46e+01 c.66.1.35 91188 1gy7A 125 7.48e+01 d.17.4.2 70738 1ev7A 317 7.63e+01 1ev7B c.52.1.9 33315 1wosA 364 7.65e+01 b.44.2.1,d.250.1.1 109468,109469 1ca1 370 7.67e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1tjoA 182 7.69e+01 1wdtA 665 7.73e+01 1tl2A 236 7.75e+01 1tl2A b.67.1.1 27541 1z5bA 469 7.75e+01 1bf2 750 7.80e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1oxxK 353 7.93e+01 b.40.6.3,c.37.1.12 93715,93716 2evbA 74 8.12e+01 1wkaA 147 8.22e+01 1z64A 26 8.27e+01 1gkpA 458 8.27e+01 b.92.1.3,c.1.9.6 70231,70232 2sga 181 8.39e+01 1qq4A b.47.1.1 25808 1eaxA 241 8.61e+01 b.47.1.2 64889 2bs3A 656 8.70e+01 2anyA 241 8.75e+01 1vquA 374 8.81e+01 1php 394 8.85e+01 16pk c.86.1.1 35452 1ym0A 238 8.99e+01 1v6pA 62 8.99e+01