# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cw8A 537 3.58e-01 1wkaA 147 6.40e-01 1vdwA 254 1.21e+00 e.7.1.1 100569 1q8rA 120 1.40e+00 d.79.6.1 96225 1vjvA 415 1.84e+00 d.3.1.9 108632 1mwmA 320 2.31e+00 c.55.1.1,c.55.1.1 79580,79581 2fdiA 211 2.44e+00 1lshA 1056 2.49e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1t9fA 187 3.04e+00 b.42.6.1 106710 1bf2 750 3.26e+00 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1xwvA 129 3.74e+00 1eu3A 210 4.48e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 2fsrA 195 4.76e+00 1vjlA 164 4.97e+00 d.257.1.1 100822 1khoA 370 5.04e+00 a.124.1.1,b.12.1.3 72489,72490 1ev7A 317 5.59e+00 1ev7B c.52.1.9 33315 1z7gA 217 5.87e+00 1ze3D 125 5.98e+00 1jsdA 319 5.98e+00 b.19.1.2 63258 3tss 194 6.20e+00 1aw7A b.40.2.2,d.15.6.1 25160,37749 1snrA 341 6.20e+00 b.6.1.3,b.6.1.3 105823,105824 1xn5A 146 6.33e+00 2fpeA 62 6.35e+00 1yt5A 258 6.84e+00 1sawA 225 7.01e+00 1b0uA 262 7.02e+00 1b0uA c.37.1.12 32370 1c9oA 66 7.19e+00 1mjc b.40.4.5 25325 1dkuA 317 7.20e+00 1dkuA c.61.1.2,c.61.1.2 34118,34119 1zk7A 467 7.33e+00 1jsmA 325 7.55e+00 b.19.1.2 63264 1tdhA 364 7.77e+00 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 2gfaA 119 8.01e+00 1uliA 460 8.17e+00 b.33.1.2,d.129.3.3 107921,107922 1vhsA 175 8.35e+00 d.108.1.1 100698 1hh8A 213 8.53e+00 1e96B a.118.8.1 61042 1qhxA 178 8.56e+00 1qhsA c.37.1.3 31936 1dgwA 178 8.58e+00 1dgwA b.82.1.2 28090 1yfsA 465 8.95e+00 1zkpA 268 9.34e+00 1t1gA 364 9.67e+00 c.41.1.2 106246 1tl2A 236 9.87e+00 1tl2A b.67.1.1 27541 1fjrA 195 1.02e+01 1fjrA b.102.1.1 59855 1d4tA 104 1.08e+01 1d4tA d.93.1.1 40537 1fjgK 129 1.09e+01 1fjfK c.55.4.1 33733 2f9nA 245 1.10e+01 1vkyA 347 1.11e+01 e.53.1.1 108696 1wkrA 340 1.12e+01 b.50.1.2 109395 1nnxA 109 1.17e+01 b.40.10.1 92013 1c8uA 285 1.19e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1to2E 281 1.21e+01 1o7nA 449 1.24e+01 b.33.1.2,d.129.3.3 81162,81163 1os8A 223 1.26e+01 b.47.1.1 93481 1lr7A 74 1.34e+01 g.3.11.3,g.68.1.1 84679,84680 1g4mA 393 1.40e+01 b.1.18.11,b.1.18.11 65143,65144 1s8iA 121 1.40e+01 a.133.1.2 98735 1gj7B 253 1.41e+01 1i8kA 107 1.41e+01 b.1.1.1 71130 1inlA 296 1.48e+01 c.66.1.17 66220 1txqA 93 1.49e+01 1tjoA 182 1.50e+01 1jovA 270 1.53e+01 b.30.5.7 84192 1vr9A 213 1.58e+01 1p8xA 344 1.58e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1i8aA 189 1.60e+01 1i82A b.1.9.2 61951 1y1oA 203 1.62e+01 1vqoU 66 1.63e+01 2f4qA 346 1.63e+01 1h2wA 710 1.67e+01 b.69.7.1,c.69.1.4 76596,76597 2b1xA 470 1.68e+01 1wdtA 665 1.68e+01 1tygB 87 1.70e+01 d.15.3.2 107455 1o6aA 96 1.71e+01 b.139.1.1 92562 3c2c 112 1.73e+01 1ycc a.3.1.1 15885 1wwzA 159 1.75e+01 2mcm 112 1.76e+01 2mcm b.1.7.1 22207 1k7iA 479 1.78e+01 b.80.7.1,d.92.1.6 77281,77282 1svy 114 1.81e+01 1svy d.109.1.1 40831 1vplA 256 1.82e+01 1b12A 248 1.83e+01 1b12A b.87.1.2 28388 1y4lA 121 1.87e+01 2fikA 287 1.91e+01 1mzyA 333 1.91e+01 b.6.1.3,b.6.1.3 103848,103849 1yifA 533 1.93e+01 1n7oA 721 1.96e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1f53A 84 1.97e+01 1f53A b.11.1.4 23632 1wyxA 69 1.99e+01 1t92A 116 2.07e+01 2cxaA 256 2.08e+01 1ee6A 197 2.09e+01 1ee6A b.80.1.1 28024 2fp7A 54 2.12e+01 1geeA 261 2.16e+01 c.2.1.2 90509 1nz0A 118 2.16e+01 d.14.1.2 86433 1c1yB 77 2.19e+01 1c1yB d.15.1.5 37618 1yb3A 175 2.32e+01 1dwkA 156 2.32e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1jb0D 138 2.35e+01 1jb0D d.187.1.1 62823 1a8q 274 2.40e+01 1brt c.69.1.12 34702 1hg8A 349 2.42e+01 b.80.1.3 65830 1vgjA 184 2.46e+01 1f35A 162 2.49e+01 1f35A b.94.1.1 59628 1y88A 199 2.51e+01 1vbkA 307 2.52e+01 1el6A 219 2.52e+01 1el6B d.182.1.1 42606 2a72A 146 2.61e+01 1d2tA 231 2.65e+01 1d2tA a.111.1.1 19052 1k3sA 113 2.71e+01 d.198.1.1 68120 1n62C 288 2.74e+01 d.87.2.1,d.145.1.3 80094,80095 1ne7A 289 2.75e+01 c.124.1.1 91833 1hkyA 86 2.82e+01 g.10.1.3 76714 1k3bA 119 2.83e+01 b.61.5.1 72016 1kv7A 488 2.84e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1tlyA 278 2.84e+01 f.4.6.1 107143 2anyA 241 2.84e+01 1pv5A 264 2.86e+01 d.251.1.1 95150 1ahsA 126 2.88e+01 1ahsA b.19.1.1 23794 1zvkA 358 2.89e+01 1udzA 182 2.90e+01 b.51.1.1 99239 1bywA 110 2.93e+01 1bywA d.110.3.6 40912 1l1oC 181 2.94e+01 b.40.4.3 73480 1wruA 379 2.95e+01 1ts9A 102 2.98e+01 1vi4A 174 2.99e+01 c.8.7.1 100731 1php 394 3.05e+01 16pk c.86.1.1 35452 1gycA 499 3.07e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2g0cA 76 3.08e+01 1rqpA 299 3.09e+01 b.141.1.1,c.132.1.1 97754,97755 1krhA 338 3.11e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1uc2A 481 3.12e+01 d.261.1.1 99161 1c7sA 858 3.15e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1rm6A 769 3.17e+01 2bwqA 129 3.18e+01 1sqhA 312 3.24e+01 d.108.1.5 98966 1yg9A 330 3.24e+01 1u9cA 224 3.25e+01 1kqfC 217 3.31e+01 f.21.1.1 72874 1bia 321 3.32e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1vr3A 191 3.32e+01 1w8sA 263 3.32e+01 1xf1A 926 3.42e+01 1gy7A 125 3.42e+01 d.17.4.2 70738 1kcqA 104 3.43e+01 d.109.1.1 68449 1zbqA 327 3.44e+01 1y4wA 518 3.46e+01 1ri9A 102 3.47e+01 b.34.2.1 97506 1mr1C 99 3.50e+01 d.217.1.2 79420 1hx0A 496 3.50e+01 b.71.1.1,c.1.8.1 61346,61347 1whzA 70 3.52e+01 1cv8 174 3.54e+01 1cv8 d.3.1.1 37089 1xttA 216 3.54e+01 1dg6A 191 3.56e+01 1d4vB b.22.1.1 23883 1op3H 225 3.58e+01 b.1.1.1,b.1.1.2 87208,87209 4ubpA 101 3.64e+01 1ubpA d.8.1.1 37352 1wosA 364 3.65e+01 b.44.2.1,d.250.1.1 109468,109469 1yqtA 538 3.69e+01 1xewX 182 3.69e+01 1rl6A 177 3.70e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1fnlA 175 3.70e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1o4tA 133 3.71e+01 b.82.1.9 86622 2fv7A 331 3.73e+01 2aexA 346 3.74e+01 1sv6A 269 3.76e+01 d.177.1.1 106043 1r0rE 274 3.82e+01 c.41.1.1 96735 2bhgA 209 3.83e+01 1msk 331 3.91e+01 1msk d.173.1.1 42495 1yhtA 367 3.92e+01 1vj0A 380 3.93e+01 b.35.1.2,c.2.1.1 100786,100787 1u79A 129 3.96e+01 d.26.1.1 107714 1z64A 26 3.99e+01 1zxtA 76 4.02e+01 1v8bA 479 4.05e+01 1xovA 326 4.07e+01 1q6uA 245 4.07e+01 d.26.1.1 95998 1fyhB 229 4.10e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1rds 105 4.10e+01 9rnt d.1.1.4 36236 4dpvZ 584 4.12e+01 2cas b.121.5.2 23377 2bklA 695 4.12e+01 1qipA 183 4.13e+01 1qipA d.32.1.1 38470 1wpuA 147 4.16e+01 1wmqA 147 4.17e+01 1i31A 314 4.19e+01 1bw8A b.2.7.1 22481 1ro7A 259 4.19e+01 c.130.1.1 97667 1pkoA 139 4.20e+01 b.1.1.1 88147 1wsrA 375 4.22e+01 1v6pA 62 4.23e+01 2bmoA 447 4.24e+01 1nziA 159 4.26e+01 b.23.1.1,g.3.11.1 86449,86450 1qwzA 235 4.26e+01 b.100.1.1 96510 1oruA 195 4.32e+01 b.58.1.2 93464 1k8kD 300 4.34e+01 d.198.2.1,d.198.2.1 68309,68310 1se8A 301 4.42e+01 b.40.4.3 105448 1p42A 270 4.42e+01 d.14.1.7,d.14.1.7 87754,87755 1hpi 71 4.47e+01 1ckuA g.35.1.1 44995 1yx1A 264 4.47e+01 2fbwA 621 4.51e+01 1umzA 278 4.52e+01 b.29.1.2 99639 2ai4A 119 4.57e+01 1vqoS 85 4.61e+01 1h8eH 146 4.61e+01 1e79H b.93.1.1 60757 1mbyA 88 4.64e+01 d.223.1.1 78931 1fsgA 233 4.66e+01 1qk3A c.61.1.1 34029 1ad2 228 4.69e+01 1ad2 e.24.1.1 43353 2fl4A 149 4.72e+01 1nr4A 71 4.74e+01 d.9.1.1 92077 1ji6A 589 4.75e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1o12A 376 4.79e+01 b.92.1.5,c.1.9.10 80758,80759 2gxfA 142 4.83e+01 1uscA 178 4.86e+01 b.45.1.2 99860 2ae5B 528 4.86e+01 2gd9A 189 4.93e+01 1yavA 159 4.94e+01 2bw4A 340 4.97e+01 1rzfH 235 4.99e+01 b.1.1.1,b.1.1.2 98150,98151 1mfgA 95 5.02e+01 b.36.1.1 79043 1wnyA 186 5.14e+01 1o54A 277 5.15e+01 c.66.1.13 92482 1ikpA 613 5.17e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2bmoB 194 5.20e+01 1l7lA 121 5.32e+01 b.18.1.16 77790 1v5vA 401 5.32e+01 1juvA 193 5.35e+01 c.71.1.1 90912 1tg0A 68 5.38e+01 1ruwA 69 5.39e+01 1jyhA 157 5.41e+01 d.60.1.3 71956 2bywA 418 5.41e+01 1jnrA 643 5.41e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1l3pA 102 5.45e+01 a.24.17.1 84520 1r4pB 70 5.47e+01 b.40.2.1 97026 2f4pA 147 5.49e+01 2a6zA 222 5.54e+01 1tkiA 321 5.54e+01 1tkiA d.144.1.7 41638 1z5bA 469 5.65e+01 1pne 140 5.65e+01 1pne d.110.1.1 40866 1qi9A 556 5.66e+01 1qhbA a.111.1.2 19053 2c43A 323 5.68e+01 1mc2A 122 5.77e+01 a.133.1.2 74622 1qhtA 775 5.83e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 2fhpA 187 5.88e+01 1qwrA 319 5.88e+01 b.82.1.3 96491 2fjbA 643 5.90e+01 1iyeA 309 5.91e+01 e.17.1.1 83786 1n6aA 259 5.91e+01 b.76.2.1,b.85.7.1 80121,80122 1w66A 232 5.92e+01 1wxcB 134 5.92e+01 2f69A 261 5.96e+01 1yozA 116 5.99e+01 1kt6A 183 6.00e+01 b.60.1.1 84466 1k2xB 143 6.02e+01 2ff4A 388 6.06e+01 1m4iA 181 6.09e+01 d.108.1.1 74457 1rc6A 261 6.12e+01 b.82.1.11 97287 1rtu 114 6.13e+01 9rnt d.1.1.4 36139 2evbA 74 6.16e+01 1vqoA 240 6.17e+01 1mgrA 99 6.19e+01 d.1.1.2 79106 2f5yA 91 6.21e+01 1n9eA 787 6.25e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1go3E 187 6.27e+01 b.40.4.5,d.230.1.1 83054,83055 1xksA 450 6.31e+01 1a3aA 148 6.31e+01 1a3aA d.112.1.1 40917 1ca1 370 6.35e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1eaiC 61 6.40e+01 1eaiC g.22.1.1 44894 1ozjA 144 6.40e+01 d.164.1.1 93846 1dnv 437 6.41e+01 1dnv b.121.5.3 23332 2dg5A 366 6.51e+01 1pgl2 370 6.52e+01 1nykA 165 6.56e+01 b.33.1.1 86408 1f39A 101 6.56e+01 1umuA b.87.1.1 28386 1b35B 255 6.62e+01 1b35B b.121.4.1 23334 1pguA 615 6.62e+01 b.69.4.1,b.69.4.1 88069,88070 1gcqC 70 6.64e+01 1gcpA b.34.2.1 60436 1fs5A 266 6.69e+01 c.124.1.1 65044 1wdjA 187 6.71e+01 1om1A 332 6.76e+01 d.144.1.7 93347 1yp5A 58 6.83e+01 7taa 478 6.85e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1qexA 288 6.94e+01 1qexA b.32.1.1 24425 2dg5B 190 6.96e+01 2b3gA 123 6.99e+01 1nar 290 7.03e+01 1nar c.1.8.5 28988 2gi3A 476 7.07e+01 1crzA 403 7.08e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 2bgcA 238 7.09e+01 1i0vA 104 7.11e+01 9rnt d.1.1.4 36054 1vp6A 138 7.11e+01 1gttA 429 7.16e+01 d.177.1.1,d.177.1.1 70529,70530 1zsyA 357 7.20e+01 2bzgA 232 7.20e+01 2cw9A 194 7.25e+01 1n08A 163 7.34e+01 b.43.5.1 79730 1fmhA 33 7.37e+01 1fmhB k.6.1.1 46409 1d4xG 126 7.41e+01 1d0nA d.109.1.1 59109 1q9uA 130 7.43e+01 d.129.7.1 96314 2d1pC 95 7.50e+01 1jb0A 755 7.53e+01 1jb0A f.29.1.1 62820 1ofdA 1520 7.53e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 2g5dA 422 7.57e+01 1i60A 278 7.58e+01 c.1.15.4 71118 1eaxA 241 7.61e+01 b.47.1.2 64889 1sefA 274 7.64e+01 b.82.1.11 105452 2aqjA 538 7.65e+01 2arpF 152 7.66e+01 1g4wR 383 7.68e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1iq6A 134 7.69e+01 d.38.1.4 76755 1zkoA 136 7.75e+01 1kafA 108 7.76e+01 d.199.1.1 68372 1ydxA 406 7.79e+01 2be1A 339 7.79e+01 1n0uA 842 7.79e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1avaC 181 7.80e+01 1avaC b.42.4.1 25604 1o1yA 239 7.81e+01 c.23.16.1 86554 2fuqA 747 7.82e+01 1oxxK 353 7.88e+01 b.40.6.3,c.37.1.12 93715,93716 2f7fA 494 7.88e+01 1eejA 216 7.91e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1dcoA 104 7.96e+01 1dcpA d.74.1.1 39680 1earA 147 7.96e+01 b.107.1.1,d.58.38.1 64875,64876 1p2hA 571 7.97e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1bf6A 291 7.97e+01 1pscA c.1.9.3 29065 2sicI 107 7.99e+01 3ssi d.84.1.1 40031 1wy7A 207 8.07e+01 1g7sA 594 8.10e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1um5L 219 8.11e+01 1a8y 367 8.15e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1ic6A 279 8.16e+01 1gci c.41.1.1 62257 2f91A 237 8.16e+01 1bxvA 91 8.20e+01 1aac b.6.1.1 22875 1a8s 273 8.21e+01 1brt c.69.1.12 34710 1skz 119 8.21e+01 1skz g.3.15.1,g.3.15.1 44366,44367 1g4iA 123 8.21e+01 1poa a.133.1.2 60241 2d0oB 125 8.21e+01 1rvkA 382 8.21e+01 c.1.11.2,d.54.1.1 97928,97929 1bm8 99 8.24e+01 1bm8 d.34.1.1 38528 1tuaA 191 8.25e+01 d.51.1.1,d.51.1.1 107321,107322 2fbyA 205 8.26e+01 1lam 484 8.27e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1p1mA 406 8.28e+01 b.92.1.4,c.1.9.9 87696,87697 1m1zA 513 8.28e+01 c.26.2.1,d.153.1.1 78457,78458 1pm4A 119 8.29e+01 b.135.1.1 94891 1x3lA 440 8.32e+01 1xs1A 193 8.34e+01 1y7xA 113 8.34e+01 1tueB 218 8.37e+01 b.91.1.1 107324 2btzA 394 8.38e+01 1wzoA 246 8.41e+01 1rewA 114 8.52e+01 g.17.1.2 97334 7a3hA 303 8.55e+01 7a3hA c.1.8.3 28817 2a7yA 83 8.59e+01 1tzjA 338 8.62e+01 2a1kA 233 8.65e+01 1s3eA 520 8.68e+01 c.3.1.2,d.16.1.5 98426,98427 1wdiA 345 8.72e+01 1xqbA 247 8.78e+01 1ugmA 125 8.78e+01 d.15.1.3 107827 1n8jA 186 8.82e+01 c.47.1.10 85401 2fm8A 135 8.82e+01 1dnlA 199 8.94e+01 1ci0A b.45.1.1 25753 1yr1A 119 8.94e+01