# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q3eA 207 3.71e-01 b.82.3.2 95669 1d4tA 104 4.71e+00 1d4tA d.93.1.1 40537 2fpeA 62 4.87e+00 1hpi 71 6.45e+00 1ckuA g.35.1.1 44995 1o97D 320 7.00e+00 c.26.2.3,c.31.1.2 81233,81234 4ubpA 101 8.14e+00 1ubpA d.8.1.1 37352 1e6bA 221 8.27e+00 1e6bA a.45.1.1,c.47.1.5 59294,59295 1aiw 62 8.44e+00 1aiw b.72.2.1 27808 1o6aA 96 1.01e+01 b.139.1.1 92562 1vgjA 184 1.18e+01 1sh0A 510 1.21e+01 e.8.1.4 98876 1vfrA 218 1.52e+01 1vfrA d.90.1.1 40247 2blfB 81 1.55e+01 1vhtA 218 1.59e+01 c.37.1.1 100700 1d0dA 60 1.75e+01 1kigI g.8.1.2 44566 1rewA 114 2.06e+01 g.17.1.2 97334 1qipA 183 2.09e+01 1qipA d.32.1.1 38470 1xn5A 146 2.10e+01 1qbjA 81 2.17e+01 1qbjA a.4.5.19 16155 2bhvA 246 2.21e+01 2gxfA 142 2.24e+01 1lktA 104 2.41e+01 1lktA b.90.1.1 28398 1wp8A 89 2.47e+01 1vp6A 138 2.51e+01 1gy7A 125 2.78e+01 d.17.4.2 70738 1gtzA 156 3.01e+01 c.23.13.1 70539 2bm8A 236 3.15e+01 1vjqA 79 3.20e+01 k.43.1.1 100830 1r5eA 115 3.28e+01 1vehA 92 3.43e+01 1wh0A 134 3.43e+01 1ycsB 239 3.47e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 2sicI 107 3.47e+01 3ssi d.84.1.1 40031 1bcpD 110 3.66e+01 1bcpD b.40.2.1 25132 1weuA 91 3.70e+01 2fp7A 54 3.75e+01 1bm9A 122 3.83e+01 1bm9A a.4.5.7 16116 1vf6C 72 3.84e+01 a.194.1.1 100602 1lxjA 104 3.88e+01 d.58.48.1 84736 1giqA 413 4.20e+01 d.166.1.1,d.166.1.1 76224,76225 1nwaA 203 4.32e+01 d.58.28.1 86295 1efnB 152 4.34e+01 1efnB d.102.1.1 40699 1zt3A 80 4.35e+01 1gyxA 76 4.36e+01 d.80.1.1 76387 2ai4A 119 4.43e+01 1mgrA 99 4.46e+01 d.1.1.2 79106 2al6A 375 4.69e+01 1pg4A 652 4.77e+01 e.23.1.1 88067 1dcoA 104 4.81e+01 1dcpA d.74.1.1 39680 1uqvA 85 4.84e+01 a.60.1.2 99798 1vcc 77 4.89e+01 1vcc d.121.1.1 41092 1agqA 135 4.95e+01 1agqA g.17.1.2 44789 1dkuA 317 5.00e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1mof 55 5.40e+01 1mof h.3.2.1 46324 2ct7A 86 5.40e+01 1lldA 319 5.41e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1im3D 95 5.44e+01 1im3D b.1.18.5 62568 2c9lY 63 5.45e+01 1yfnA 118 5.76e+01 1twuA 139 6.02e+01 d.32.1.8 107413 1guuA 52 6.11e+01 a.4.1.3 83332 2aheA 267 6.38e+01 1ejxA 100 6.49e+01 d.8.1.1 83182 1vk9A 151 6.56e+01 c.139.1.1 108640 1y4mA 53 6.70e+01 1wjtA 103 6.80e+01 1e1oA 504 6.89e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 3caoA 103 7.06e+01 3caoA a.138.1.1 19661 1ks8A 433 7.21e+01 a.102.1.2 77519 1o54A 277 7.31e+01 c.66.1.13 92482 1zud2 66 7.48e+01 1ki1B 352 7.52e+01 a.87.1.1,b.55.1.1 72497,72498 3ullA 132 7.52e+01 3ullA b.40.4.3 25282 1edg 380 7.52e+01 1edg c.1.8.3 28807 1cdcA 99 7.69e+01 1cdcA b.1.1.1 19746 1vfyA 73 7.69e+01 1vfyA g.50.1.1 45357 1rqjA 299 7.72e+01 a.128.1.1 97744 1c8cA 64 7.74e+01 1azpA b.34.13.1 59084 1eaiC 61 7.75e+01 1eaiC g.22.1.1 44894 1vyoA 128 7.83e+01 1udzA 182 7.98e+01 b.51.1.1 99239 2g5cA 281 8.19e+01 2a3qA 170 8.26e+01 1gy6A 127 8.33e+01 d.17.4.2 70736 1ejfA 125 8.35e+01 1ejfA b.15.1.2 23683 1pbyC 79 8.41e+01 a.137.9.1 94423 2c4wA 176 8.47e+01 1bxyA 60 8.49e+01 1bxyA d.59.1.1 39525 1mk4A 157 8.52e+01 d.108.1.1 84979 1m5iA 125 8.53e+01 h.4.13.1 78648 1z7gA 217 8.62e+01 1t6sA 162 8.62e+01 1g2cB 43 8.62e+01 1g2cB 1xccA 220 8.79e+01 1wnyA 186 8.81e+01 1j27A 102 8.87e+01 d.58.50.1 90778