# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjvA 415 3.42e+00 d.3.1.9 108632 1mjc 69 5.96e+00 1mjc b.40.4.5 25319 1wjnA 97 6.90e+00 2fsrA 195 7.01e+00 1fjgK 129 7.03e+00 1fjfK c.55.4.1 33733 1q8rA 120 7.67e+00 d.79.6.1 96225 1bzyA 217 7.93e+00 1qk3A c.61.1.1 34071 2fpeA 62 8.19e+00 1lshA 1056 8.46e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1bf2 750 1.12e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1zkpA 268 1.15e+01 1ee6A 197 1.22e+01 1ee6A b.80.1.1 28024 1yu6A 275 1.24e+01 1r0rE 274 1.26e+01 c.41.1.1 96735 1qhxA 178 1.30e+01 1qhsA c.37.1.3 31936 1zkoA 136 1.32e+01 1eu3A 210 1.38e+01 1an8 b.40.2.2,d.15.6.1 25206,37795 1xn5A 146 1.40e+01 2a72A 146 1.45e+01 1vjlA 164 1.51e+01 d.257.1.1 100822 1gj7B 253 1.57e+01 1c5yB 253 1.57e+01 5ptp 1ze3D 125 1.65e+01 3tss 194 1.79e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 2fdiA 211 1.85e+01 1wkaA 147 1.90e+01 1cf1A 404 1.94e+01 1cf1A b.1.18.11,b.1.18.11 21907,21908 1vdwA 254 1.96e+01 e.7.1.1 100569 1c1yB 77 1.96e+01 1c1yB d.15.1.5 37618 1kcqA 104 2.00e+01 d.109.1.1 68449 2ff4A 388 2.06e+01 1c9oA 66 2.10e+01 1mjc b.40.4.5 25325 1uliA 460 2.12e+01 b.33.1.2,d.129.3.3 107921,107922 1sup 275 2.16e+01 1gci c.41.1.1 32510 1mwmA 320 2.17e+01 c.55.1.1,c.55.1.1 79580,79581 1lw6E 281 2.17e+01 c.41.1.1 74293 1to2E 281 2.18e+01 1khoA 370 2.22e+01 a.124.1.1,b.12.1.3 72489,72490 1mgrA 99 2.24e+01 d.1.1.2 79106 1nz0A 118 2.47e+01 d.14.1.2 86433 1v88A 130 2.47e+01 b.55.1.1 108423 1u69A 163 2.49e+01 d.32.1.7 107699 1vbkA 307 2.55e+01 1cseE 274 2.56e+01 1gci c.41.1.1 32481 1sawA 225 2.59e+01 1o6aA 96 2.61e+01 b.139.1.1 92562 1sv6A 269 2.78e+01 d.177.1.1 106043 1l1oC 181 2.79e+01 b.40.4.3 73480 1t9fA 187 2.97e+01 b.42.6.1 106710 1yt5A 258 3.06e+01 2f9nA 245 3.12e+01 1eguA 731 3.13e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1d9tA 289 3.18e+01 1deaA 1v6pA 62 3.31e+01 1ne7A 289 3.35e+01 c.124.1.1 91833 1ro7A 259 3.42e+01 c.130.1.1 97667 1xttA 216 3.42e+01 1g31A 111 3.47e+01 1g31A b.35.1.1 24656 1t1gA 364 3.62e+01 c.41.1.2 106246 1os8A 223 3.70e+01 b.47.1.1 93481 1sgt 223 3.71e+01 5ptp b.47.1.1 25814 2sicI 107 3.72e+01 3ssi d.84.1.1 40031 2cw8A 537 3.75e+01 1q38A 89 3.78e+01 b.1.2.1 95663 1ymiA 334 3.81e+01 1yqtA 538 3.99e+01 4dpvZ 584 4.07e+01 2cas b.121.5.2 23377 1q6hA 224 4.09e+01 d.26.1.1 95975 1oacA 727 4.14e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1jsdA 319 4.15e+01 b.19.1.2 63258 1t3yA 141 4.33e+01 1y1oA 203 4.41e+01 1gt91 357 4.48e+01 1wruA 379 4.52e+01 1bm8 99 4.55e+01 1bm8 d.34.1.1 38528 1z64A 26 4.55e+01 1tygB 87 4.62e+01 d.15.3.2 107455 1z7gA 217 4.62e+01 1n7oA 721 4.65e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1ym0A 238 4.66e+01 1q6uA 245 4.67e+01 d.26.1.1 95998 1vplA 256 4.68e+01 1vfqA 143 4.70e+01 1nekA 588 4.73e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1c8uA 285 4.73e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1xwvA 129 4.93e+01 1te5A 257 4.95e+01 d.153.1.1 106795 2anyA 241 5.00e+01 1o54A 277 5.02e+01 c.66.1.13 92482 1rqpA 299 5.03e+01 b.141.1.1,c.132.1.1 97754,97755 1be9A 119 5.03e+01 1pdr b.36.1.1 24774 1ogoX 574 5.12e+01 b.133.1.1,b.80.1.10 92925,92926 1pylA 97 5.18e+01 d.1.1.2 104391 2anwA 241 5.23e+01 1c7sA 858 5.23e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1sf9A 128 5.28e+01 b.34.15.1 98831 1svy 114 5.28e+01 1svy d.109.1.1 40831 1ic6A 279 5.33e+01 1gci c.41.1.1 62257 1hpi 71 5.42e+01 1ckuA g.35.1.1 44995 1ev7A 317 5.47e+01 1ev7B c.52.1.9 33315 1j9qA 341 5.47e+01 1nif b.6.1.3,b.6.1.3 62765,62766 2bbvA 363 5.53e+01 2bbvA b.121.4.4 23323 1snrA 341 5.53e+01 b.6.1.3,b.6.1.3 105823,105824 1szoA 257 5.59e+01 c.14.1.3 106164 1t2lA 141 5.76e+01 1php 394 5.78e+01 16pk c.86.1.1 35452 1a8y 367 5.80e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1ikpA 613 5.86e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1ltoA 245 5.86e+01 b.47.1.2 84707 1i8kA 107 5.88e+01 b.1.1.1 71130 1mqiA 263 6.05e+01 c.94.1.1 91398 1uisA 231 6.07e+01 d.22.1.1 99431 1yobA 179 6.14e+01 1jnuA 104 6.19e+01 d.110.3.6 71762 1g4iA 123 6.20e+01 1poa a.133.1.2 60241 2mcm 112 6.25e+01 2mcm b.1.7.1 22207 1a3aA 148 6.32e+01 1a3aA d.112.1.1 40917 1vr9A 213 6.36e+01 1aiw 62 6.37e+01 1aiw b.72.2.1 27808 1mojA 182 6.39e+01 a.25.1.1 91367 1o0pA 104 6.53e+01 d.58.7.1 86535 1aw7A 194 6.59e+01 1aw7A b.40.2.2,d.15.6.1 25164,37753 1s5aA 150 6.62e+01 d.17.4.10 98525 1pm4A 119 6.67e+01 b.135.1.1 94891 1yg9A 330 6.68e+01 1ahsA 126 6.69e+01 1ahsA b.19.1.1 23794 1tjoA 182 6.76e+01 1x13A 401 6.77e+01 1iw8A 231 6.79e+01 a.111.1.1 76866 1udmA 149 6.89e+01 d.109.1.2 107780 1eg9A 449 6.91e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1fsgA 233 6.93e+01 1qk3A c.61.1.1 34029 2bx6A 350 6.93e+01 1o7nA 449 6.93e+01 b.33.1.2,d.129.3.3 81162,81163 1gci 269 6.94e+01 1gci c.41.1.1 32503 1zxiC 288 6.94e+01 1ojxA 263 6.96e+01 c.1.10.1 93164 1dmuA 299 7.07e+01 1dmuA c.52.1.4 33294 2sga 181 7.11e+01 1qq4A b.47.1.1 25808 1d2tA 231 7.13e+01 1d2tA a.111.1.1 19052 1ftkA 279 7.38e+01 1gr2A c.94.1.1 35819 1ijaA 148 7.39e+01 1ijaA b.100.1.1 62484 1dkuA 317 7.48e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1w8sA 263 7.50e+01 1inlA 296 7.56e+01 c.66.1.17 66220 1vhsA 175 7.59e+01 d.108.1.1 100698 1dkgA 197 7.67e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 3c2c 112 7.77e+01 1ycc a.3.1.1 15885 1tlyA 278 7.93e+01 f.4.6.1 107143 1eaxA 241 7.93e+01 b.47.1.2 64889 2adgA 214 7.95e+01 1m1zA 513 7.98e+01 c.26.2.1,d.153.1.1 78457,78458 1tl2A 236 8.05e+01 1tl2A b.67.1.1 27541 1mb4A 370 8.10e+01 c.2.1.3,d.81.1.1 78908,78909 2fikA 287 8.18e+01 1yozA 116 8.18e+01 1q5dA 419 8.23e+01 a.104.1.1 95891 1n62C 288 8.33e+01 d.87.2.1,d.145.1.3 80094,80095 1hn4A 131 8.45e+01 a.133.1.2 65893 1rm6A 769 8.47e+01 1qj2C 285 8.67e+01 1qj2C 1zxiF 288 8.69e+01 1qfmA 710 8.70e+01 1qfmA b.69.7.1,c.69.1.4 27673,34641 1ktjA 129 8.80e+01 b.1.18.7 72974 1h2wA 710 8.81e+01 b.69.7.1,c.69.1.4 76596,76597 1a0fA 201 8.83e+01 1a0fA a.45.1.1,c.47.1.5 17737,33031 1n2aA 201 8.92e+01 a.45.1.1,c.47.1.5 91553,91554 1li1A 229 8.97e+01 d.169.1.6,d.169.1.6 73898,73899