# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b43A 526 3.73e-01 4ubpA 101 2.79e+00 1ubpA d.8.1.1 37352 1ojxA 263 6.55e+00 c.1.10.1 93164 1w8sA 263 6.62e+00 1qbjA 81 6.95e+00 1qbjA a.4.5.19 16155 2fpeA 62 8.45e+00 1z2cB 383 1.06e+01 1sh0A 510 1.10e+01 e.8.1.4 98876 2fulA 178 1.18e+01 1dcoA 104 1.38e+01 1dcpA d.74.1.1 39680 1w07A 659 1.40e+01 1udzA 182 1.44e+01 b.51.1.1 99239 1om1A 332 1.46e+01 d.144.1.7 93347 1ev7A 317 1.51e+01 1ev7B c.52.1.9 33315 1wnyA 186 1.58e+01 1ycsB 239 1.66e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1wk8A 194 2.02e+01 1m2rA 327 2.07e+01 d.144.1.7 84760 1rqjA 299 2.11e+01 a.128.1.1 97744 1edg 380 2.20e+01 1edg c.1.8.3 28807 1wggA 96 2.30e+01 1vgjA 184 2.30e+01 1mk4A 157 2.33e+01 d.108.1.1 84979 2ayuA 417 2.39e+01 1ftkA 279 2.41e+01 1gr2A c.94.1.1 35819 2blfB 81 2.48e+01 5reqA 727 2.50e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 2bnxA 386 2.50e+01 1whi 122 2.52e+01 1whi b.39.1.1 24810 1o0pA 104 2.53e+01 d.58.7.1 86535 1ejxA 100 2.68e+01 d.8.1.1 83182 1giqA 413 2.70e+01 d.166.1.1,d.166.1.1 76224,76225 1uqvA 85 2.75e+01 a.60.1.2 99798 1tygB 87 2.75e+01 d.15.3.2 107455 1o0uA 429 2.75e+01 c.118.1.1 80743 1ei5A 520 2.85e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2ai4A 119 2.86e+01 1lxiA 139 2.89e+01 g.17.1.2 84735 1mqiA 263 2.94e+01 c.94.1.1 91398 1ic6A 279 2.96e+01 1gci c.41.1.1 62257 1reqA 727 3.04e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1fs5A 266 3.17e+01 c.124.1.1 65044 1rewA 114 3.21e+01 g.17.1.2 97334 1yuzA 202 3.22e+01 1vbkA 307 3.23e+01 1d9tA 289 3.46e+01 1deaA 1uqrA 154 3.55e+01 c.23.13.1 99779 1vcc 77 3.56e+01 1vcc d.121.1.1 41092 1wh0A 134 3.65e+01 1ne7A 289 3.70e+01 c.124.1.1 91833 1hpi 71 3.73e+01 1ckuA g.35.1.1 44995 1lrzA 426 3.75e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2b8nA 429 3.85e+01 2g7jA 124 3.94e+01 1hfoA 113 3.98e+01 d.80.1.3 61006 1wkrA 340 3.98e+01 b.50.1.2 109395 1fjgK 129 4.10e+01 1fjfK c.55.4.1 33733 1j26A 112 4.28e+01 d.50.4.1 103823 1vdxA 184 4.43e+01 3ullA 132 4.78e+01 3ullA b.40.4.3 25282 1vjvA 415 4.86e+01 d.3.1.9 108632 2cxxA 190 4.92e+01 1n67A 359 4.99e+01 b.2.3.4,b.2.3.4 85354,85355 1z4hA 66 5.08e+01 1t1gA 364 5.14e+01 c.41.1.2 106246 1bm9A 122 5.21e+01 1bm9A a.4.5.7 16116 2crvA 120 5.41e+01 1ymiA 334 5.47e+01 1gt91 357 5.55e+01 1aiw 62 5.82e+01 1aiw b.72.2.1 27808 1nbwA 607 5.83e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1yrvA 169 5.84e+01 2gd9A 189 5.92e+01 1sv6A 269 6.20e+01 d.177.1.1 106043 1k3sA 113 6.41e+01 d.198.1.1 68120 2c78A 405 6.50e+01 1exmA 405 6.51e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1lv7A 257 6.64e+01 c.37.1.20 78232 1xjuA 163 6.80e+01 1ut9A 609 7.01e+01 a.102.1.2,b.1.18.2 99912,99913 1qysA 106 7.08e+01 k.41.1.1 96603 1jmvA 141 7.11e+01 c.26.2.4 66897 1wr7A 41 7.37e+01 2adoA 196 7.42e+01 8dfr 189 7.46e+01 1aoeA c.71.1.1 34895 1sqhA 312 7.49e+01 d.108.1.5 98966 1wjnA 97 7.54e+01 1yb5A 351 7.58e+01 2viuA 328 7.61e+01 1hgeA b.19.1.2 23797 1m65A 245 7.84e+01 c.6.3.1 84847 2a4vA 159 8.12e+01 2bnjA 303 8.31e+01 1mjc 69 8.38e+01 1mjc b.40.4.5 25319 1d4tA 104 8.38e+01 1d4tA d.93.1.1 40537 1i1wA 303 8.40e+01 c.1.8.3 76732 1xn5A 146 8.42e+01 1kexA 155 8.51e+01 b.18.1.2 77350 1r5eA 115 8.75e+01 1gtzA 156 8.82e+01 c.23.13.1 70539 1zyeA 220 8.84e+01 1fjnA 39 8.88e+01 1fjnA g.3.7.3 44171