# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjvA 415 2.19e+00 d.3.1.9 108632 1eu3A 210 2.72e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 1khoA 370 5.33e+00 a.124.1.1,b.12.1.3 72489,72490 1mwmA 320 7.04e+00 c.55.1.1,c.55.1.1 79580,79581 1xn5A 146 7.12e+00 1lshA 1056 7.42e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2fsrA 195 7.79e+00 2fpeA 62 8.04e+00 1ee6A 197 9.71e+00 1ee6A b.80.1.1 28024 1vjlA 164 1.26e+01 d.257.1.1 100822 1hx0A 496 1.61e+01 b.71.1.1,c.1.8.1 61346,61347 2ff4A 388 1.67e+01 1jsdA 319 1.83e+01 b.19.1.2 63258 1vbkA 307 1.84e+01 1zxiF 288 1.90e+01 1zxiC 288 1.93e+01 3tss 194 1.94e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1n62C 288 1.95e+01 d.87.2.1,d.145.1.3 80094,80095 1rm6A 769 2.04e+01 1ojxA 263 2.09e+01 c.1.10.1 93164 1y1oA 203 2.10e+01 1l1oC 181 2.11e+01 b.40.4.3 73480 2a72A 146 2.13e+01 1w8sA 263 2.14e+01 1mb4A 370 2.21e+01 c.2.1.3,d.81.1.1 78908,78909 1fjgK 129 2.31e+01 1fjfK c.55.4.1 33733 1rqpA 299 2.47e+01 b.141.1.1,c.132.1.1 97754,97755 1mjc 69 2.54e+01 1mjc b.40.4.5 25319 1wggA 96 2.63e+01 1vhsA 175 2.71e+01 d.108.1.1 100698 1dkuA 317 2.73e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 2f9nA 245 2.80e+01 1qj2C 285 2.82e+01 1qj2C 1c8uA 285 2.88e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1yobA 179 2.88e+01 2bbvA 363 2.89e+01 2bbvA b.121.4.4 23323 2fdiA 211 3.05e+01 1t9fA 187 3.27e+01 b.42.6.1 106710 1yb3A 175 3.29e+01 1rz1A 161 3.33e+01 b.45.1.2 98124 1ikpA 613 3.60e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1zkpA 268 3.64e+01 1pm4A 119 3.69e+01 b.135.1.1 94891 1tlyA 278 3.71e+01 f.4.6.1 107143 1nekA 588 3.74e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1l1jA 239 3.74e+01 b.47.1.1 84516 1c5yB 253 3.75e+01 5ptp 1gj7B 253 3.82e+01 1ne7A 289 3.91e+01 c.124.1.1 91833 1hpi 71 3.97e+01 1ckuA g.35.1.1 44995 1g94A 448 4.04e+01 b.71.1.1,c.1.8.1 65169,65170 1nz0A 118 4.06e+01 d.14.1.2 86433 1brwA 433 4.06e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1aqm 453 4.15e+01 1smd b.71.1.1,c.1.8.1 27717,28704 1wsrA 375 4.15e+01 1wjnA 97 4.23e+01 1cf1A 404 4.37e+01 1cf1A b.1.18.11,b.1.18.11 21907,21908 2sicI 107 4.38e+01 3ssi d.84.1.1 40031 1o7nA 449 4.43e+01 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 4.43e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1yifA 533 4.57e+01 1mgrA 99 4.62e+01 d.1.1.2 79106 1d4tA 104 4.64e+01 1d4tA d.93.1.1 40537 1iqaA 160 4.68e+01 b.22.1.1 71274 1smd 496 4.83e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1d9tA 289 4.98e+01 1deaA 1c7sA 858 5.00e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2cw8A 537 5.03e+01 1xwvA 129 5.15e+01 1kgcD 206 5.21e+01 b.1.1.1,b.1.1.2 77384,77385 1v88A 130 5.22e+01 b.55.1.1 108423 1wwzA 159 5.24e+01 1ze3D 125 5.27e+01 1q8rA 120 5.28e+01 d.79.6.1 96225 1ltoA 245 5.33e+01 b.47.1.2 84707 1m2rA 327 5.36e+01 d.144.1.7 84760 1s55A 156 5.41e+01 1om1A 332 5.44e+01 d.144.1.7 93347 1aw7A 194 5.45e+01 1aw7A b.40.2.2,d.15.6.1 25164,37753 1zkoA 136 5.58e+01 1rds 105 5.74e+01 9rnt d.1.1.4 36236 1pylA 97 5.76e+01 d.1.1.2 104391 2covD 104 5.91e+01 1ahsA 126 6.00e+01 1ahsA b.19.1.1 23794 1bmv2 374 6.00e+01 1bmv2 1vplA 256 6.18e+01 1vdxA 184 6.28e+01 1ei5A 520 6.38e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1qhxA 178 6.42e+01 1qhsA c.37.1.3 31936 1fnoA 417 6.44e+01 d.58.19.1,c.56.5.4 70145,75841 1bzyA 217 6.45e+01 1qk3A c.61.1.1 34071 1sawA 225 6.47e+01 1lniA 96 6.57e+01 d.1.1.2 74046 1sqhA 312 6.71e+01 d.108.1.5 98966 1yfsA 465 6.80e+01 1inlA 296 6.84e+01 c.66.1.17 66220 2bcoA 350 6.92e+01 1k3bA 119 6.92e+01 b.61.5.1 72016 1ic6A 279 6.96e+01 1gci c.41.1.1 62257 1n7oA 721 6.96e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1ro7A 259 6.96e+01 c.130.1.1 97667 1vp6A 138 7.01e+01 1vgjA 184 7.12e+01 1eguA 731 7.13e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1q6uA 245 7.18e+01 d.26.1.1 95998 1be9A 119 7.34e+01 1pdr b.36.1.1 24774 1vdwA 254 7.40e+01 e.7.1.1 100569 1lxiA 139 7.42e+01 g.17.1.2 84735 1ks8A 433 7.64e+01 a.102.1.2 77519 1w18A 493 7.66e+01 1riqA 465 7.68e+01 a.203.1.1,d.104.1.1 97516,97517 1jsmA 325 7.72e+01 b.19.1.2 63264 1hh8A 213 7.75e+01 1e96B a.118.8.1 61042 1yqtA 538 7.88e+01 1yr4A 237 7.94e+01 2f91A 237 7.94e+01 1e79H 146 8.00e+01 1e79H a.2.10.1,b.93.1.1 15721,28438 1qwzA 235 8.08e+01 b.100.1.1 96510 2c1iA 431 8.13e+01 1wm5A 208 8.28e+01 1k8kD 300 8.40e+01 d.198.2.1,d.198.2.1 68309,68310 1z7gA 217 8.47e+01 1h8eH 146 8.50e+01 1e79H b.93.1.1 60757 1aiw 62 8.62e+01 1aiw b.72.2.1 27808 1fepA 724 8.63e+01 1fepA f.4.3.3 43808 1go7P 462 8.68e+01 b.80.7.1,d.92.1.6 76245,76246 1q38A 89 8.76e+01 b.1.2.1 95663 1k7iA 479 8.86e+01 b.80.7.1,d.92.1.6 77281,77282 1o6aA 96 8.96e+01 b.139.1.1 92562