# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q3eA 207 5.54e-01 b.82.3.2 95669 2b43A 526 2.66e+00 2fpeA 62 6.61e+00 1d4tA 104 6.72e+00 1d4tA d.93.1.1 40537 1o97D 320 8.88e+00 c.26.2.3,c.31.1.2 81233,81234 1hpi 71 9.20e+00 1ckuA g.35.1.1 44995 1aiw 62 1.03e+01 1aiw b.72.2.1 27808 4ubpA 101 1.17e+01 1ubpA d.8.1.1 37352 1e6bA 221 1.20e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1o6aA 96 1.56e+01 b.139.1.1 92562 1sh0A 510 1.66e+01 e.8.1.4 98876 1vgjA 184 1.73e+01 1o0pA 104 2.06e+01 d.58.7.1 86535 1vfrA 218 2.19e+01 1vfrA d.90.1.1 40247 1vhtA 218 2.26e+01 c.37.1.1 100700 2blfB 81 2.27e+01 1j26A 112 2.29e+01 d.50.4.1 103823 1d0dA 60 2.41e+01 1kigI g.8.1.2 44566 1vdxA 184 2.42e+01 1y7pA 223 2.44e+01 1wgoA 123 2.57e+01 1rewA 114 2.95e+01 g.17.1.2 97334 1qbjA 81 2.99e+01 1qbjA a.4.5.19 16155 1lxiA 139 3.09e+01 g.17.1.2 84735 2bhvA 246 3.12e+01 1qipA 183 3.16e+01 1qipA d.32.1.1 38470 1lktA 104 3.17e+01 1lktA b.90.1.1 28398 1xn5A 146 3.19e+01 1gy7A 125 3.31e+01 d.17.4.2 70738 1wp8A 89 3.44e+01 1vp6A 138 3.57e+01 2gxfA 142 3.74e+01 1kbjA 412 3.75e+01 c.1.4.1 72280 1mjc 69 4.06e+01 1mjc b.40.4.5 25319 2sicI 107 4.25e+01 3ssi d.84.1.1 40031 2bm8A 236 4.32e+01 1gtzA 156 4.36e+01 c.23.13.1 70539 1n3bA 216 4.46e+01 c.37.1.1 79959 1mbe 53 4.57e+01 1mbe a.4.1.3 16038 1vjqA 79 4.71e+01 k.43.1.1 100830 1r5eA 115 4.74e+01 1wjnA 97 4.83e+01 1ycsB 239 4.92e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1wh0A 134 4.99e+01 1bcpD 110 5.19e+01 1bcpD b.40.2.1 25132 1vehA 92 5.27e+01 1vf6C 72 5.37e+01 a.194.1.1 100602 1weuA 91 5.47e+01 1bm9A 122 5.53e+01 1bm9A a.4.5.7 16116 2fp7A 54 5.57e+01 1gyxA 76 5.68e+01 d.80.1.1 76387 1lxjA 104 5.73e+01 d.58.48.1 84736 1giqA 413 6.03e+01 d.166.1.1,d.166.1.1 76224,76225 1zt3A 80 6.14e+01 2ct7A 86 6.15e+01 1nwaA 203 6.16e+01 d.58.28.1 86295 1wggA 96 6.19e+01 1mgrA 99 6.31e+01 d.1.1.2 79106 1im3D 95 6.33e+01 1im3D b.1.18.5 62568 1d0iA 156 6.34e+01 2dhqA c.23.13.1 31383 1efnB 152 6.50e+01 1efnB d.102.1.1 40699 1uqvA 85 6.55e+01 a.60.1.2 99798 2aehA 369 6.69e+01 2al6A 375 6.82e+01 1vcc 77 6.93e+01 1vcc d.121.1.1 41092 1pg4A 652 7.05e+01 e.23.1.1 88067 1dcoA 104 7.07e+01 1dcpA d.74.1.1 39680 1q16A 1247 7.11e+01 b.52.2.2,c.81.1.1 95546,95547 1dkuA 317 7.17e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1agqA 135 7.32e+01 1agqA g.17.1.2 44789 1y5iA 1246 7.40e+01 1mof 55 7.54e+01 1mof h.3.2.1 46324 1lylA 504 7.69e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1yrvA 169 7.69e+01 1ycqA 107 7.69e+01 1ycqA a.42.1.1 17419 1lldA 319 7.75e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1louA 101 7.86e+01 1ris d.58.14.1 39323 1jqeA 292 7.92e+01 c.66.1.19 71789 2ai4A 119 8.11e+01 1qcwA 410 8.24e+01 1gox c.1.4.1 28622 2c9lY 63 8.45e+01 1twuA 139 8.56e+01 d.32.1.8 107413 1edg 380 8.58e+01 1edg c.1.8.3 28807 1y4mA 53 8.97e+01