# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 5.06e-12 1bfeA 119 6.88e-12 1pdr b.36.1.1 24775 1pdr 99 8.10e-12 1pdr b.36.1.1 24771 1tp5A 119 8.75e-12 1be9A 119 1.21e-11 1pdr b.36.1.1 24774 1n7eA 97 2.69e-11 b.36.1.1 91691 1qavA 90 3.21e-11 1qauA b.36.1.1 24777 2fcfA 103 3.32e-11 1i92A 91 6.62e-11 1pdr b.36.1.1 61990 1g9oA 91 6.98e-11 1pdr b.36.1.1 60400 1n7fA 97 1.17e-10 b.36.1.1 91692 1ihjA 98 1.74e-10 1pdr b.36.1.1 62382 1l6oA 95 6.10e-10 b.36.1.1 84534 1q3oA 109 1.14e-09 b.36.1.1 95700 1v5lA 103 1.32e-09 b.36.1.1 108378 2f0aA 98 1.63e-09 1mfgA 95 1.65e-09 b.36.1.1 79043 1wf7A 103 1.92e-09 1i16 130 2.49e-09 1i16 b.36.1.2 24787 1kwaA 88 3.25e-09 1kwaA b.36.1.1 24772 1qauA 112 4.77e-09 1qauA b.36.1.1 24779 1nf3C 128 5.62e-09 b.36.1.1 85596 1qavB 115 7.18e-09 1qauA b.36.1.1 24780 1kwaB 88 8.15e-09 1kwaA b.36.1.1 24773 1b8qA 127 1.54e-08 1qauA b.36.1.1 24781 1n99A 166 1.82e-08 b.36.1.1,b.36.1.1 85459,85460 1m5zA 91 2.64e-08 b.36.1.1 78676 2f5yA 91 1.14e-07 1r6jA 82 1.37e-06 b.36.1.1 97151 1nteA 82 1.57e-06 b.36.1.1 86163 1fc6A 388 2.00e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 1.53e-04 b.36.1.4,b.47.1.1 73834,73835 1ky9B 448 3.44e-04 b.36.1.4,b.36.1.4,b.47.1.1 73200,73201,73202 1te0A 318 4.17e-04 1ky9A 448 8.92e-04 b.36.1.4,b.47.1.1 73198,73199 1sotA 320 5.90e-03 b.36.1.4,b.47.1.1 105852,105853 1y8tA 324 4.73e-01 2bh4X 134 2.03e+00 2a6tA 271 2.94e+00 1ah1 129 3.56e+00 1ah1 b.1.1.1 20652 1cis 66 6.49e+00 2sniI k.1.1.1 46375 1db3A 372 6.72e+00 1db3A c.2.1.2 29813 1rypL 212 7.27e+00 d.153.1.4 41880 1koe 172 7.80e+00 1koe d.169.1.5 42448 1g65K 211 8.43e+00 d.153.1.4 41907 1i8lC 126 9.23e+00 1ah1 b.1.1.1 61974 1cot 129 9.33e+00 1ycc a.3.1.1 15899 1bx4A 345 1.03e+01 1bx4A c.72.1.1 34935 1txnA 328 1.07e+01 1kw4A 89 1.15e+01 a.60.1.2 73077 1mjc 69 1.21e+01 1mjc b.40.4.5 25319 1rm6A 769 1.41e+01 1fxlA 167 1.43e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2aqwA 332 1.64e+01 1bp3A 191 1.67e+01 1huw a.26.1.1 16838 2sniI 83 1.70e+01 2sniI d.40.1.1 38573 1t3qB 788 1.78e+01 d.41.1.1,d.133.1.1 106369,106370 1qbiA 454 1.98e+01 1c9uA b.68.2.1 27619 1dpuA 99 2.14e+01 1dpuA a.4.5.16 16150 1p99A 295 2.28e+01 c.94.1.1 94384 1viuA 203 2.34e+01 d.113.1.1 100771 1jjtA 228 2.38e+01 1a7tA d.157.1.1 63139 2brfA 110 2.44e+01 2d4pA 141 2.47e+01 1dax 64 2.47e+01 1fxd d.58.1.4 38996 1z1dA 103 2.49e+01 1qo0D 196 2.61e+01 1qo0D c.23.1.3 31125 1fxrA 64 2.62e+01 1fxd d.58.1.4 38993 1coaI 64 2.65e+01 2sniI d.40.1.1 38574 2d27A 149 2.73e+01 1x6vA 630 2.77e+01 2d28C 149 2.86e+01 1cv8 174 2.93e+01 1cv8 d.3.1.1 37089 1gbs 185 3.01e+01 153l d.2.1.5 36986 1cruA 454 3.04e+01 1c9uA b.68.2.1 27617 2aa4A 289 3.26e+01 1dfd 64 3.28e+01 1fxd d.58.1.4 38995 153l 185 3.34e+01 153l d.2.1.5 36984 1a3lH 218 3.35e+01 1mfa b.1.1.1,b.1.1.2 20241,21253 1xebA 150 3.42e+01 2cc0A 195 3.43e+01 1sw5A 275 3.46e+01 c.94.1.1 106069 1a22A 180 3.46e+01 1huw a.26.1.1 16833 1f3z 161 3.50e+01 1gpr b.84.3.1 28273 2ajuH 219 3.58e+01 1csp 67 3.64e+01 1mjc b.40.4.5 25321 1c9uA 454 3.69e+01 1c9uA b.68.2.1 27623 1bxeA 113 3.69e+01 1bxeA d.55.1.1 38898 1hztA 190 3.75e+01 1i9aA d.113.1.2 61459 1ggrA 168 3.88e+01 1gpr b.84.3.1 28279 1jj2L 194 3.88e+01 1ffkI d.12.1.2 63097 1xewY 172 3.92e+01 1glaF 168 3.95e+01 1gpr b.84.3.1 28274 2coaA 125 3.98e+01 1mek 120 4.11e+01 1erv c.47.1.2 32775 1t6t1 118 4.16e+01 3sxlA 184 4.23e+01 1b7fA d.58.7.1,d.58.7.1 39173,39174 1xjvA 294 4.34e+01 155c 135 4.38e+01 1ycc a.3.1.1 15900 1r6xA 395 4.43e+01 b.122.1.3,c.26.1.5 97167,97168 1earA 147 4.45e+01 b.107.1.1,d.58.38.1 64875,64876 1j08A 226 4.48e+01 c.47.1.2,c.47.1.2 83855,83856 1l1dA 152 4.52e+01 b.88.1.3 73452 1b7fA 168 4.52e+01 1b7fA d.58.7.1,d.58.7.1 39169,39170 1eb0A 147 4.54e+01 b.107.1.1,d.58.38.1 64890,64891 35c8H 217 4.57e+01 8fabA b.1.1.1,b.1.1.2 20297,21289 1x84A 189 4.59e+01 1wveC 80 4.64e+01 3mefA 69 4.78e+01 1mjc b.40.4.5 25320 1lw6I 64 4.93e+01 d.40.1.1 74294 1fdr 248 5.07e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1rurH 218 5.12e+01 b.1.1.1,b.1.1.2 97879,97880 1ialA 453 5.17e+01 1bk5A a.118.1.1 19116 1rl4A 188 5.26e+01 d.167.1.1 97636 1irsA 112 5.34e+01 1qqgA b.55.1.2 26991 1i9aA 182 5.40e+01 1i9aA d.113.1.2 62082 1to2I 64 5.46e+01 1o63A 219 5.48e+01 c.94.1.1 92540 1pueE 89 5.53e+01 1awcA a.4.5.21 16165 1v9dA 340 5.65e+01 a.207.1.1 100535 1qpcA 279 5.74e+01 1fgkA d.144.1.7 41685 1k1gA 131 5.81e+01 d.51.1.1 68015 1kgsA 225 5.97e+01 a.4.6.1,c.23.1.1 68596,68597 1unkA 87 6.00e+01 1cei a.28.2.1 16935 2ccmA 191 6.01e+01 1cei 94 6.11e+01 1cei a.28.2.1 16939 1yjmA 110 6.13e+01 1jnyA 435 6.14e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1i4jA 110 6.19e+01 d.55.1.1 76734 1axiA 191 6.33e+01 1huw a.26.1.1 16832 1a8l 226 6.38e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1wbiA 129 6.47e+01 1p35A 299 6.53e+01 1p35A b.28.1.1 23925 1qw2A 102 6.59e+01 d.249.1.1 96456 1d1nA 99 6.63e+01 1d1nA b.43.3.1 25718 1sw5B 275 6.65e+01 c.94.1.1 106070 1ae6H 218 6.77e+01 1igtB b.1.1.1,b.1.1.2 20211,21223 1xdyA 298 6.83e+01 1ai1H 221 6.97e+01 1igtB b.1.1.1,b.1.1.2 19883,20979 1jhfA 202 7.00e+01 a.4.5.2,b.87.1.1 63057,63058 1vpqA 273 7.17e+01 7reqB 637 7.23e+01 1reqB c.1.19.1,c.23.6.1 29617,31244 1rss 151 7.23e+01 1rss a.75.1.1 18392 1yhuB 144 7.25e+01 1xo5A 183 7.27e+01 1ww7A 160 7.30e+01 1ujxA 119 7.48e+01 b.26.1.2 99473 2c2xA 281 7.50e+01 3lck 271 7.50e+01 1fmk d.144.1.7 41686 1ga1A 372 7.57e+01 1ga1A c.41.1.2 32557 1fmk 452 7.62e+01 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24511,40436,41690 1afvH 220 7.73e+01 1mfa b.1.1.1,b.1.1.2 20131,21161 1jjeA 222 7.76e+01 1a7tA d.157.1.1 63117 1wvhA 134 7.77e+01 1evlA 401 7.77e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1yllA 200 7.80e+01 1ga6A 372 7.83e+01 1ga1A c.41.1.2 32556 2sxl 88 7.84e+01 1b7fA d.58.7.1 39179 1ifyA 49 7.86e+01 a.5.2.1 71207 1bd2D 204 8.11e+01 1tcrA b.1.1.1,b.1.1.2 20622,21557 1pk1B 89 8.17e+01 2as0A 396 8.19e+01 1r13A 148 8.20e+01 d.169.1.1,h.1.1.1 96782,96783 1xwsA 313 8.33e+01 2bshA 125 8.39e+01 1bza 262 8.40e+01 1btl e.3.1.1 42701 1nwbA 124 8.48e+01 b.124.1.1 86296 1t9iA 163 8.52e+01 1reqD 637 8.71e+01 1reqB c.1.19.1,c.23.6.1 29623,31250 1dlc 584 8.74e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1umzA 278 8.79e+01 b.29.1.2 99639 1kqqA 139 8.90e+01 a.4.3.1 72885 2bsjA 133 8.94e+01 1iz5A 249 8.96e+01 d.131.1.2,d.131.1.2 83834,83835 1yljA 263 8.99e+01