# TARGET T0288 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0288.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1801 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.006 0.001 0.001 0.003 0.065 0.924 2 M 0.059 0.006 0.003 0.003 0.108 0.820 3 V 0.097 0.016 0.003 0.001 0.111 0.773 4 P 0.141 0.005 0.006 0.001 0.166 0.683 5 G 0.404 0.002 0.004 0.001 0.126 0.464 6 K 0.929 0.002 0.001 0.001 0.011 0.057 7 V 0.984 0.001 0.001 0.001 0.003 0.012 8 T 0.990 0.001 0.001 0.001 0.002 0.007 9 L 0.979 0.001 0.001 0.001 0.003 0.017 10 Q 0.952 0.001 0.001 0.001 0.009 0.038 11 K 0.851 0.011 0.001 0.001 0.023 0.114 12 D 0.296 0.024 0.005 0.001 0.649 0.026 13 A 0.021 0.002 0.047 0.001 0.914 0.015 14 Q 0.006 0.001 0.062 0.001 0.919 0.012 15 N 0.094 0.013 0.041 0.001 0.836 0.015 16 L 0.390 0.016 0.005 0.001 0.134 0.454 17 I 0.852 0.015 0.002 0.001 0.042 0.089 18 G 0.921 0.002 0.001 0.001 0.020 0.055 19 I 0.970 0.001 0.001 0.001 0.006 0.022 20 S 0.977 0.001 0.001 0.001 0.006 0.016 21 I 0.958 0.002 0.001 0.001 0.011 0.028 22 G 0.816 0.008 0.001 0.002 0.053 0.120 23 G 0.414 0.013 0.004 0.003 0.185 0.380 24 G 0.134 0.013 0.014 0.004 0.497 0.338 25 A 0.069 0.016 0.123 0.011 0.572 0.209 26 Q 0.048 0.007 0.136 0.012 0.644 0.154 27 Y 0.064 0.030 0.095 0.009 0.580 0.223 28 C 0.050 0.010 0.009 0.001 0.388 0.542 29 P 0.093 0.005 0.005 0.001 0.318 0.578 30 C 0.541 0.016 0.002 0.001 0.128 0.312 31 L 0.930 0.003 0.001 0.001 0.015 0.051 32 Y 0.984 0.001 0.001 0.001 0.003 0.011 33 I 0.986 0.001 0.001 0.001 0.003 0.009 34 V 0.975 0.001 0.001 0.002 0.005 0.017 35 Q 0.941 0.001 0.001 0.002 0.013 0.043 36 V 0.660 0.015 0.002 0.002 0.061 0.260 37 F 0.353 0.012 0.006 0.003 0.491 0.136 38 D 0.108 0.008 0.012 0.013 0.700 0.159 39 N 0.035 0.012 0.014 0.027 0.710 0.202 40 T 0.110 0.092 0.015 0.044 0.547 0.192 41 P 0.064 0.036 0.127 0.231 0.264 0.278 42 A 0.052 0.014 0.259 0.351 0.228 0.096 43 A 0.054 0.007 0.369 0.279 0.237 0.055 44 L 0.093 0.022 0.184 0.286 0.317 0.098 45 D 0.063 0.016 0.086 0.220 0.455 0.159 46 G 0.041 0.008 0.056 0.098 0.479 0.317 47 T 0.176 0.026 0.044 0.015 0.262 0.477 48 V 0.277 0.190 0.032 0.013 0.117 0.371 49 A 0.157 0.049 0.019 0.007 0.751 0.018 50 A 0.032 0.003 0.009 0.009 0.935 0.012 51 G 0.010 0.001 0.007 0.009 0.958 0.015 52 D 0.476 0.032 0.003 0.005 0.472 0.012 53 E 0.893 0.015 0.001 0.004 0.028 0.058 54 I 0.973 0.005 0.001 0.005 0.007 0.010 55 T 0.976 0.001 0.002 0.006 0.007 0.008 56 G 0.977 0.001 0.001 0.007 0.008 0.006 57 V 0.905 0.005 0.003 0.020 0.057 0.011 58 N 0.402 0.005 0.005 0.051 0.461 0.076 59 G 0.177 0.002 0.004 0.020 0.622 0.175 60 R 0.778 0.033 0.005 0.005 0.098 0.081 61 S 0.745 0.046 0.004 0.011 0.047 0.147 62 I 0.379 0.022 0.083 0.015 0.482 0.018 63 K 0.087 0.002 0.037 0.007 0.835 0.033 64 G 0.024 0.002 0.037 0.010 0.870 0.057 65 K 0.230 0.096 0.003 0.004 0.541 0.125 66 T 0.097 0.033 0.001 0.004 0.023 0.843 67 K 0.004 0.001 0.015 0.945 0.014 0.021 68 V 0.001 0.001 0.007 0.984 0.005 0.003 69 E 0.001 0.001 0.004 0.993 0.002 0.001 70 V 0.001 0.001 0.001 0.997 0.001 0.001 71 A 0.001 0.001 0.001 0.998 0.001 0.001 72 K 0.001 0.001 0.001 0.997 0.001 0.001 73 M 0.001 0.001 0.002 0.993 0.003 0.001 74 I 0.001 0.001 0.004 0.989 0.005 0.001 75 Q 0.003 0.001 0.006 0.974 0.015 0.002 76 E 0.005 0.001 0.009 0.890 0.050 0.045 77 V 0.011 0.014 0.017 0.481 0.151 0.326 78 K 0.015 0.002 0.020 0.054 0.368 0.541 79 G 0.033 0.001 0.009 0.006 0.403 0.548 80 E 0.555 0.008 0.006 0.006 0.152 0.272 81 V 0.865 0.005 0.003 0.004 0.034 0.090 82 T 0.951 0.004 0.001 0.001 0.010 0.033 83 I 0.926 0.003 0.001 0.001 0.012 0.056 84 H 0.703 0.005 0.002 0.001 0.062 0.226 85 Y 0.330 0.008 0.005 0.003 0.158 0.496 86 N 0.162 0.009 0.011 0.007 0.243 0.567 87 K 0.194 0.012 0.074 0.131 0.338 0.252 88 L 0.295 0.013 0.064 0.225 0.212 0.192 89 Q 0.322 0.007 0.077 0.293 0.150 0.152 90 Y 0.342 0.009 0.052 0.292 0.085 0.221 91 Y 0.289 0.011 0.038 0.278 0.079 0.306 92 K 0.151 0.012 0.014 0.212 0.059 0.552 93 V 0.011 0.001 0.001 0.007 0.016 0.965