# TARGET T0288 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0288.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1591 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.041 0.004 0.011 0.003 0.252 0.689 2 M 0.102 0.015 0.011 0.002 0.227 0.644 3 V 0.170 0.038 0.004 0.001 0.155 0.632 4 P 0.218 0.011 0.005 0.001 0.198 0.567 5 G 0.528 0.003 0.003 0.001 0.104 0.363 6 K 0.978 0.001 0.001 0.001 0.005 0.016 7 V 0.996 0.001 0.001 0.001 0.001 0.003 8 T 0.996 0.001 0.001 0.001 0.001 0.003 9 L 0.983 0.001 0.001 0.001 0.002 0.014 10 Q 0.947 0.001 0.001 0.001 0.012 0.041 11 K 0.841 0.013 0.001 0.001 0.032 0.113 12 D 0.287 0.017 0.004 0.001 0.645 0.045 13 A 0.045 0.006 0.036 0.002 0.882 0.028 14 Q 0.014 0.002 0.063 0.002 0.895 0.023 15 N 0.078 0.012 0.065 0.002 0.809 0.034 16 L 0.248 0.021 0.029 0.006 0.251 0.444 17 I 0.550 0.037 0.016 0.006 0.152 0.240 18 G 0.685 0.005 0.006 0.002 0.093 0.208 19 I 0.928 0.003 0.001 0.001 0.015 0.053 20 S 0.970 0.002 0.001 0.001 0.008 0.019 21 I 0.951 0.004 0.001 0.001 0.015 0.029 22 G 0.746 0.006 0.003 0.001 0.086 0.158 23 G 0.388 0.014 0.008 0.002 0.220 0.368 24 G 0.195 0.025 0.026 0.005 0.411 0.338 25 A 0.135 0.026 0.162 0.012 0.480 0.185 26 Q 0.092 0.011 0.218 0.013 0.508 0.157 27 Y 0.109 0.021 0.182 0.014 0.483 0.191 28 C 0.122 0.012 0.020 0.002 0.449 0.394 29 P 0.167 0.004 0.009 0.002 0.310 0.507 30 C 0.671 0.014 0.002 0.001 0.086 0.226 31 L 0.953 0.002 0.001 0.001 0.012 0.033 32 Y 0.989 0.001 0.001 0.001 0.002 0.008 33 I 0.992 0.001 0.001 0.001 0.002 0.005 34 V 0.980 0.001 0.001 0.001 0.004 0.015 35 Q 0.952 0.001 0.001 0.001 0.009 0.037 36 V 0.759 0.009 0.001 0.001 0.038 0.192 37 F 0.470 0.019 0.004 0.003 0.329 0.175 38 D 0.102 0.008 0.009 0.008 0.653 0.221 39 N 0.025 0.009 0.013 0.012 0.706 0.235 40 T 0.066 0.042 0.013 0.012 0.613 0.254 41 P 0.046 0.015 0.288 0.120 0.301 0.229 42 A 0.066 0.018 0.438 0.206 0.185 0.087 43 A 0.081 0.018 0.467 0.164 0.237 0.033 44 L 0.160 0.029 0.146 0.154 0.396 0.115 45 D 0.101 0.012 0.063 0.086 0.609 0.128 46 G 0.121 0.009 0.027 0.039 0.607 0.197 47 T 0.329 0.026 0.020 0.016 0.273 0.336 48 V 0.342 0.176 0.016 0.010 0.139 0.318 49 A 0.240 0.038 0.024 0.011 0.630 0.057 50 A 0.143 0.008 0.015 0.012 0.762 0.061 51 G 0.057 0.003 0.014 0.008 0.867 0.052 52 D 0.522 0.014 0.005 0.003 0.406 0.050 53 E 0.907 0.007 0.002 0.002 0.029 0.053 54 I 0.975 0.002 0.001 0.002 0.008 0.012 55 T 0.989 0.001 0.001 0.001 0.002 0.006 56 G 0.983 0.001 0.001 0.001 0.005 0.009 57 V 0.918 0.002 0.001 0.002 0.049 0.027 58 N 0.567 0.004 0.002 0.005 0.307 0.115 59 G 0.415 0.007 0.004 0.006 0.436 0.132 60 R 0.787 0.021 0.004 0.003 0.119 0.065 61 S 0.816 0.032 0.003 0.005 0.049 0.096 62 I 0.446 0.024 0.015 0.007 0.493 0.015 63 K 0.127 0.004 0.011 0.005 0.816 0.037 64 G 0.017 0.002 0.013 0.008 0.906 0.054 65 K 0.092 0.078 0.003 0.010 0.648 0.170 66 T 0.049 0.020 0.001 0.028 0.036 0.866 67 K 0.001 0.001 0.003 0.992 0.001 0.003 68 V 0.001 0.001 0.001 0.998 0.001 0.001 69 E 0.001 0.001 0.001 0.999 0.001 0.001 70 V 0.001 0.001 0.001 0.999 0.001 0.001 71 A 0.001 0.001 0.001 0.999 0.001 0.001 72 K 0.001 0.001 0.001 0.997 0.001 0.001 73 M 0.001 0.001 0.002 0.992 0.004 0.001 74 I 0.001 0.001 0.004 0.987 0.005 0.001 75 Q 0.003 0.001 0.009 0.976 0.009 0.003 76 E 0.004 0.001 0.011 0.900 0.031 0.052 77 V 0.009 0.011 0.029 0.475 0.150 0.326 78 K 0.017 0.006 0.020 0.020 0.432 0.504 79 G 0.050 0.001 0.013 0.002 0.445 0.488 80 E 0.696 0.007 0.003 0.001 0.100 0.193 81 V 0.947 0.002 0.001 0.001 0.011 0.039 82 T 0.986 0.001 0.001 0.001 0.003 0.011 83 I 0.991 0.001 0.001 0.001 0.002 0.007 84 H 0.989 0.001 0.001 0.001 0.002 0.009 85 Y 0.977 0.001 0.001 0.001 0.004 0.018 86 N 0.873 0.002 0.001 0.001 0.025 0.099 87 K 0.651 0.005 0.003 0.003 0.093 0.245 88 L 0.324 0.020 0.030 0.019 0.243 0.364 89 Q 0.175 0.010 0.078 0.028 0.352 0.357 90 Y 0.169 0.015 0.081 0.034 0.308 0.393 91 Y 0.116 0.027 0.025 0.050 0.199 0.583 92 K 0.084 0.019 0.006 0.031 0.106 0.753 93 V 0.022 0.003 0.001 0.005 0.039 0.931