# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 3.42e-14 1qavA 90 4.76e-14 1qauA b.36.1.1 24777 2fcfA 103 5.11e-14 1g9oA 91 8.71e-14 1pdr b.36.1.1 60400 1tp5A 119 2.16e-13 1be9A 119 2.30e-13 1pdr b.36.1.1 24774 1n7fA 97 1.59e-12 b.36.1.1 91692 1n7eA 97 1.71e-12 b.36.1.1 91691 1q3oA 109 2.61e-12 b.36.1.1 95700 2f0aA 98 3.39e-12 1ihjA 98 3.48e-12 1pdr b.36.1.1 62382 1l6oA 95 6.03e-12 b.36.1.1 84534 1mfgA 95 1.08e-11 b.36.1.1 79043 1wf7A 103 1.36e-11 1qauA 112 4.31e-11 1qauA b.36.1.1 24779 1nf3C 128 8.22e-11 b.36.1.1 85596 1kwaA 88 8.64e-11 1kwaA b.36.1.1 24772 1nteA 82 3.14e-10 b.36.1.1 86163 1r6jA 82 3.14e-10 b.36.1.1 97151 1v5lA 103 3.45e-10 b.36.1.1 108378 2f5yA 91 4.92e-10 1fc6A 388 7.94e-06 1fc6A b.36.1.3,c.14.1.2 64738,64739 1te0A 318 5.93e-05 1lcyA 325 1.37e-04 b.36.1.4,b.47.1.1 73834,73835 1zn8A 180 9.10e-03 1y8tA 324 1.14e-02 1sotA 320 1.15e-01 b.36.1.4,b.47.1.1 105852,105853 1qb7A 236 2.64e-01 1qb7A c.61.1.1 34087 1x3mA 415 5.08e-01 1fxlA 167 5.09e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1g2qA 187 5.23e-01 c.61.1.1 65117 1un8A 552 1.28e+00 c.119.1.2,a.208.1.1 103806,99661 1l1qA 186 1.73e+00 c.61.1.1 77653 1cliA 345 2.01e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1db3A 372 2.17e+00 1db3A c.2.1.2 29813 1w30A 201 2.20e+00 2bw3A 534 2.39e+00 1fwkA 296 2.88e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 2agcA 162 2.92e+00 1zm8A 259 3.53e+00 2bhoA 130 3.76e+00 2bsjA 133 4.68e+00 2g8oA 264 5.03e+00 2g8mA 264 5.12e+00 1yg9A 330 5.13e+00 1o57A 291 5.19e+00 a.4.5.40,c.61.1.1 92483,92484 1qqqA 264 5.34e+00 1bkpA d.117.1.1 40931 1u9yA 284 5.37e+00 1evfA 264 5.37e+00 1bkpA d.117.1.1 40932 1vdmA 153 5.59e+00 1h72C 296 6.02e+00 d.14.1.5,d.58.26.1 60712,60713 1q52A 314 6.41e+00 c.14.1.3 95846 1fsgA 233 6.48e+00 1qk3A c.61.1.1 34029 1n6aA 259 7.18e+00 b.76.2.1,b.85.7.1 80121,80122 2adcA 229 7.45e+00 2f69A 261 7.85e+00 1t6t1 118 8.27e+00 1y0bA 197 8.62e+00 1ad3A 452 8.70e+00 1ad3A c.82.1.1 35335 2bshA 125 9.54e+00 1o63A 219 9.77e+00 c.94.1.1 92540 2az4A 429 1.04e+01 1vchA 175 1.14e+01 2fvgA 340 1.26e+01 1h3gA 601 1.31e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2bw4A 340 1.34e+01 1vpqA 273 1.41e+01 1mkmA 249 1.42e+01 a.4.5.33,d.110.2.2 79242,79243 1nonA 179 1.43e+01 c.61.1.1 103868 2bnjA 303 1.51e+01 1wvcA 259 1.63e+01 1yjmA 110 1.64e+01 1kcbA 340 1.65e+01 b.6.1.3,b.6.1.3 90951,90952 2bsyA 278 1.69e+01 1rwrA 301 1.73e+01 b.80.1.11 97990 1xznA 179 1.82e+01 1g57A 217 1.85e+01 1g57A d.115.1.2 60253 1q1rA 431 1.91e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1opr 213 1.98e+01 1opr c.61.1.1 34091 1hw7A 255 2.08e+01 1i7fA d.193.1.1 61297 2bh8A 101 2.08e+01 1jalA 363 2.09e+01 c.37.1.8,d.15.10.2 84138,84139 2d4pA 141 2.23e+01 1i1wA 303 2.27e+01 c.1.8.3 76732 1xx6A 191 2.30e+01 1rurH 218 2.33e+01 b.1.1.1,b.1.1.2 97879,97880 1r0vA 305 2.40e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1i52A 236 2.48e+01 1i52A c.68.1.13 61767 1x65A 89 2.49e+01 1oroA 213 2.54e+01 1opr c.61.1.1 34093 1vkpA 383 2.61e+01 d.126.1.6 108686 2affA 120 2.62e+01 1vj0A 380 2.65e+01 b.35.1.2,c.2.1.1 100786,100787 1vckA 115 2.67e+01 1ukvG 453 2.72e+01 c.3.1.3,c.3.1.3,d.16.1.6 107915,107916,107917 2aeeA 211 2.73e+01 1y7mA 164 2.77e+01 1r62A 160 2.80e+01 d.122.1.3 104816 1tzfA 259 2.87e+01 c.68.1.13 107476 1xv5A 401 2.90e+01 1o12A 376 2.92e+01 b.92.1.5,c.1.9.10 80758,80759 1nif 340 2.96e+01 1nif b.6.1.3,b.6.1.3 23048,23049 1fjrA 195 2.98e+01 1fjrA b.102.1.1 59855 1y9wA 140 3.08e+01 1bzyA 217 3.09e+01 1qk3A c.61.1.1 34071 2ghpA 292 3.12e+01 2c5qA 240 3.15e+01 1cruA 454 3.18e+01 1c9uA b.68.2.1 27617 1iscA 192 3.25e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1uh5A 329 3.39e+01 c.2.1.2 107840 1vraB 215 3.47e+01 2arcA 164 3.48e+01 2arcA b.82.4.1 28148 1gjjA 168 3.58e+01 a.140.1.1,a.140.1.1 83291,83292 1r13A 148 3.63e+01 d.169.1.1,h.1.1.1 96782,96783 1rl2A 137 3.71e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1vkmA 297 3.77e+01 c.138.1.1 108670 1hvyA 288 3.81e+01 1bkpA d.117.1.1 41049 1wd5A 208 3.82e+01 1uheA 97 3.87e+01 1ujxA 119 3.99e+01 b.26.1.2 99473 1dmgA 225 4.00e+01 1dmgA c.22.1.1 31036 1bg4 302 4.02e+01 1taxA c.1.8.3 28806 1vzoA 355 4.11e+01 d.144.1.7 108971 2ptd 298 4.15e+01 2plc c.1.18.2 29605 2brfA 110 4.15e+01 2bcgG 453 4.21e+01 1xmrA 243 4.24e+01 1to2I 64 4.28e+01 1earA 147 4.37e+01 b.107.1.1,d.58.38.1 64875,64876 1hgxA 183 4.40e+01 1tc1A c.61.1.1 34027 1lw6I 64 4.49e+01 d.40.1.1 74294 2f4wA 187 4.50e+01 1wlgA 299 4.52e+01 1o5oA 221 4.60e+01 c.61.1.1 92509 1gv3A 248 4.65e+01 a.2.11.1,d.44.1.1 70585,70586 2akrA 285 4.66e+01 1lh0A 213 4.78e+01 c.61.1.1 73896 1r31A 428 4.80e+01 d.58.20.1,d.179.1.1 96897,96898 1wtaA 275 4.85e+01 1d8cA 723 4.89e+01 1d8cA c.1.13.1 29325 1l0bA 229 4.93e+01 c.15.1.3,c.15.1.3 73391,73392 1ta3B 303 5.06e+01 c.1.8.3 106732 1npuA 117 5.08e+01 b.1.1.1 92038 1zq1C 633 5.08e+01 2a2pA 129 5.11e+01 1p7tA 731 5.13e+01 c.1.13.1 94319 1qgdA 662 5.18e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1dkuA 317 5.24e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 2b4aA 138 5.25e+01 2b8tA 223 5.28e+01 1st0A 337 5.38e+01 d.13.1.3,d.246.1.1 98979,98980 1l7bA 92 5.39e+01 c.15.1.2 91053 1ni4A 365 5.40e+01 c.36.1.11 85728 1mlcB 218 5.46e+01 1igtB b.1.1.1,b.1.1.2 20053,21095 1cg2A 393 5.47e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1h70A 255 5.54e+01 1h70A d.126.1.3 60711 1h8dH 260 5.57e+01 5ptp 1zybA 232 5.60e+01 1vzqH 250 5.68e+01 1js8A 394 5.69e+01 a.86.1.1,b.112.1.1 67219,67220 1i6pA 220 5.75e+01 1ddzA c.53.2.1 61848 2c9wA 169 5.80e+01 1ucyH 150 5.85e+01 1ucyH 1h05A 146 5.89e+01 c.23.13.1 76433 2dg5A 366 5.96e+01 1idk 359 5.97e+01 1qcxA b.80.1.2 28025 2bkfA 87 6.05e+01 1fxrA 64 6.09e+01 1fxd d.58.1.4 38993 1zsyA 357 6.17e+01 1fa8A 135 6.18e+01 1qipA d.32.1.1 38486 1b25A 619 6.29e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1k8mA 93 6.37e+01 b.84.1.1 68314 1xtmA 175 6.45e+01 1xdnA 277 6.53e+01 2f1rA 171 6.60e+01 2f6rA 281 6.63e+01 1j9qA 341 6.68e+01 1nif b.6.1.3,b.6.1.3 62765,62766 1cjbA 231 6.69e+01 1qk3A c.61.1.1 34079 1kk1A 410 6.76e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1cl1A 395 6.78e+01 1cl2A c.67.1.3 34395 2dhqA 146 6.99e+01 2dhqA c.23.13.1 31382 1voqa 90 7.02e+01 2f7fA 494 7.04e+01 1koe 172 7.07e+01 1koe d.169.1.5 42448 1zkkA 167 7.14e+01 1xtlA 175 7.25e+01 1rtu 114 7.29e+01 9rnt d.1.1.4 36139 1n3gA 113 7.30e+01 d.204.1.1 79962 1snrA 341 7.33e+01 b.6.1.3,b.6.1.3 105823,105824 1bx4A 345 7.34e+01 1bx4A c.72.1.1 34935 2aefA 234 7.35e+01 1rutX 188 7.46e+01 1w78A 422 7.67e+01 1ftkA 279 7.85e+01 1gr2A c.94.1.1 35819 1ppfE 218 7.87e+01 1a7s b.47.1.2 26234 1sdwA 314 7.89e+01 b.121.1.2,b.121.1.2 98810,98811 1eyqA 222 7.97e+01 1eypA d.36.1.1 38534 2cwaA 263 8.08e+01 1o7fA 469 8.10e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1se8A 301 8.11e+01 b.40.4.3 105448 1qs0B 338 8.17e+01 1qs0B c.36.1.7,c.48.1.2 31830,33103 1vjjA 692 8.26e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1gctA 245 8.47e+01 5ptp b.47.1.2 26021 1sjqA 105 8.51e+01 d.58.7.1 105660 1oq1A 223 8.61e+01 b.29.1.17 93408 1ecfA 504 8.72e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1yioA 208 8.81e+01 1u3oA 82 8.82e+01 1ueoA 63 8.86e+01 j.107.1.1 99269 1tc6A 236 8.97e+01 d.122.1.1 106756 1o3yA 166 8.98e+01 c.37.1.8 86618