CreatePredAlphaCost pred_alpha2k alpha11 T0287.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0287.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 3 \
	sidechain 1 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k .1 \
	pred_alpha04 .1 \
	constraints 10 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1

#include T0287.dssp-ehl2.constraints
#include T0287.t06.str2.constraints
#include T0287.t06.dssp-ebghstl.constraints
#include T0287.t06.stride-ebghtl.constraints
#include T0287.t06.bys.constraints

# from try11-opt2
HelixConstraint (T0287)M1	(T0287)A13	.5
HelixConstraint (T0287)K19	(T0287)N33	.5
HelixConstraint (T0287)E36	(T0287)F50	.5
HelixConstraint (T0287)H55	(T0287)L61	.5
HelixConstraint (T0287)D62	(T0287)N67	.5
HelixConstraint (T0287)D71	(T0287)K77	.5
HelixConstraint (T0287)I79	(T0287)L90	.5
HelixConstraint (T0287)E92	(T0287)N105	.5
# HelixConstraint (T0287)S111	(T0287)L122	.5
# HelixConstraint (T0287)I120	(T0287)F125	.1

HelixConstraint (T0287)Q141	(T0287)G146	.2
# HelixConstraint (T0287)T170	(T0287)F185
# HelixConstraint (T0287)E193	(T0287)A199

# from try4-opt2
SheetConstraint (T0287)S126 (T0287)K132	(T0287)E188 (T0287)L182	hbond (T0287)I129	.5
SheetConstraint (T0287)S134 (T0287)D139	(T0287)D180 (T0287)N175	hbond (T0287)I135	.5
SheetConstraint (T0287)V162 (T0287)Y165	(T0287)R179 (T0287)D176	hbond (T0287)N163	.5
SheetConstraint (T0287)N198 (T0287)A199	(T0287)L149 (T0287)P150	hbond (T0287)A199	.5

# include T0287.449a_45.rr.long.constraints