PFRMAT RR TARGET T0287 AUTHOR XXXX-XXXX-XXXX REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: logseploglen.5xt04_ent.5xnearNS_str2.miRpz_entR_pplR.n45.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF FKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH AIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 8 22 0 8 0.627641244933 8 23 0 8 0.605832183504 8 26 0 8 0.545820950798 8 40 0 8 0.52458786361 8 41 0 8 0.497488374229 8 44 0 8 0.532212242642 8 50 0 8 0.498607863681 8 51 0 8 0.511165394677 8 61 0 8 0.461680520966 8 64 0 8 0.598048679811 8 65 0 8 0.53436251539 8 75 0 8 0.545942024714 8 76 0 8 0.508308417072 8 87 0 8 0.466274001271 8 90 0 8 0.453676822138 8 98 0 8 0.504458589094 8 99 0 8 0.5053096037 8 102 0 8 0.465245085133 9 22 0 8 0.586169168578 9 23 0 8 0.527690676759 9 26 0 8 0.507599238234 9 40 0 8 0.461279599811 9 41 0 8 0.439772183024 9 44 0 8 0.440901623342 9 47 0 8 0.432195845231 9 50 0 8 0.499271452451 9 51 0 8 0.504777719572 9 54 0 8 0.430539207881 9 61 0 8 0.422120719505 9 64 0 8 0.541195927207 9 65 0 8 0.478642490307 9 75 0 8 0.46601603939 9 76 0 8 0.462011767471 9 87 0 8 0.436472445623 9 98 0 8 0.445776408789 9 99 0 8 0.453047327342 9 102 0 8 0.442012558508 11 23 0 8 0.481465910952 12 22 0 8 0.629967036449 12 23 0 8 0.639112244776 12 26 0 8 0.539108612896 12 40 0 8 0.56607040817 12 41 0 8 0.547375539879 12 44 0 8 0.576452044305 12 47 0 8 0.442459117016 12 50 0 8 0.48263528079 12 51 0 8 0.472700311793 12 54 0 8 0.425308913377 12 61 0 8 0.464116501906 12 64 0 8 0.593930884996 12 65 0 8 0.528680936275 12 75 0 8 0.531442212537 12 76 0 8 0.543932197708 12 87 0 8 0.478940050081 12 90 0 8 0.440600439257 12 98 0 8 0.500309892892 12 99 0 8 0.519168943483 12 102 0 8 0.526012737024 22 31 0 8 0.449774170669 22 40 0 8 0.522376284025 22 41 0 8 0.500963350536 22 44 0 8 0.547724232757 22 50 0 8 0.512605723472 22 51 0 8 0.500238975008 22 61 0 8 0.477628081987 22 64 0 8 0.590646453417 22 65 0 8 0.552208810604 22 75 0 8 0.552709362294 22 76 0 8 0.518525274798 22 87 0 8 0.470319833603 22 90 0 8 0.456699482498 22 98 0 8 0.524037719435 22 99 0 8 0.531558443496 22 102 0 8 0.47509882391 22 181 0 8 0.426279283267 23 40 0 8 0.575978171092 23 41 0 8 0.567600964179 23 44 0 8 0.579654773606 23 47 0 8 0.436623037666 23 50 0 8 0.480356508797 23 51 0 8 0.476289063005 23 61 0 8 0.431069507139 23 64 0 8 0.579594858602 23 65 0 8 0.512644233564 23 75 0 8 0.52267336188 23 76 0 8 0.518673813725 23 87 0 8 0.468132499365 23 90 0 8 0.424141777254 23 98 0 8 0.477023945477 23 99 0 8 0.493615363734 23 102 0 8 0.450610748344 26 40 0 8 0.555596176119 26 41 0 8 0.538847093237 26 44 0 8 0.579464134957 26 50 0 8 0.521006425029 26 51 0 8 0.507604303797 26 61 0 8 0.466309177891 26 64 0 8 0.594148757738 26 65 0 8 0.540842391373 26 75 0 8 0.547046218827 26 76 0 8 0.514173634371 26 87 0 8 0.472731871163 26 90 0 8 0.473137634491 26 98 0 8 0.515053865052 26 99 0 8 0.538018947652 26 102 0 8 0.48552572316 26 178 0 8 0.440675735279 31 40 0 8 0.570389735271 31 41 0 8 0.545728934621 31 44 0 8 0.554376088767 31 50 0 8 0.509478562155 31 51 0 8 0.531873235677 31 61 0 8 0.458441446547 31 64 0 8 0.575526085153 31 65 0 8 0.524708895329 31 75 0 8 0.496622162934 31 76 0 8 0.526106261534 31 87 0 8 0.448158054165 31 98 0 8 0.439834191512 31 99 0 8 0.464415503177 31 102 0 8 0.470752647819 32 41 0 8 0.518745332468 32 44 0 8 0.564409128515 32 50 0 8 0.462234552732 32 51 0 8 0.488650039497 32 54 0 8 0.432165166762 32 61 0 8 0.433111816676 32 64 0 8 0.557698648075 32 65 0 8 0.493063661041 32 75 0 8 0.461522226175 32 76 0 8 0.496475261603 32 87 0 8 0.420000751915 32 99 0 8 0.446363314257 32 102 0 8 0.428347888635 40 50 0 8 0.615865223252 40 51 0 8 0.589328323331 40 54 0 8 0.538048005392 40 61 0 8 0.571566248075 40 64 0 8 0.652968951139 40 65 0 8 0.587057 40 69 0 8 0.451994551561 40 72 0 8 0.437065955438 40 74 0 8 0.462058669632 40 75 0 8 0.605848523959 40 76 0 8 0.575182935585 40 87 0 8 0.551453309369 40 90 0 8 0.536721035273 40 98 0 8 0.565923344069 40 99 0 8 0.555585282482 40 102 0 8 0.550814039092 40 171 0 8 0.448357942259 40 178 0 8 0.443245910577 40 181 0 8 0.429535583666 41 50 0 8 0.603402902435 41 51 0 8 0.579583964965 41 54 0 8 0.532018524377 41 61 0 8 0.542842532465 41 64 0 8 0.629084651846 41 65 0 8 0.590978709348 41 75 0 8 0.57516659513 41 76 0 8 0.563782744383 41 87 0 8 0.530924016176 41 90 0 8 0.498977649789 41 98 0 8 0.539316860031 41 99 0 8 0.548465205122 41 102 0 8 0.538125492698 41 181 0 8 0.430346371788 44 54 0 8 0.553983917832 44 61 0 8 0.577263620267 44 64 0 8 0.648442644933 44 65 0 8 0.598184850275 44 69 0 8 0.462615632783 44 75 0 8 0.610222319246 44 76 0 8 0.583767121603 44 87 0 8 0.56860317879 44 90 0 8 0.554648429694 44 91 0 8 0.427076923472 44 98 0 8 0.559670396386 44 99 0 8 0.57777562121 44 102 0 8 0.553510044619 44 178 0 8 0.491174678995 44 181 0 8 0.453356648061 47 76 0 8 0.465705312579 50 61 0 8 0.509286070756 50 64 0 8 0.602896348311 50 65 0 8 0.568706668342 50 69 0 8 0.44316935769 50 75 0 8 0.548247272074 50 76 0 8 0.520709347174 50 87 0 8 0.435059537931 50 98 0 8 0.467030298602 50 99 0 8 0.49962604187 50 102 0 8 0.447409537046 51 61 0 8 0.56021507824 51 64 0 8 0.630876655145 51 65 0 8 0.596850379733 51 69 0 8 0.47849371042 51 75 0 8 0.57262837769 51 76 0 8 0.543840181532 51 84 0 8 0.422766930466 51 87 0 8 0.483888605386 51 90 0 8 0.495222497666 51 98 0 8 0.530953073916 51 99 0 8 0.555225792459 51 102 0 8 0.497498505355 51 178 0 8 0.446550443536 51 181 0 8 0.431424500857 54 69 0 8 0.452401552507 54 76 0 8 0.533306750843 54 102 0 8 0.475288180129 61 75 0 8 0.552286297911 61 76 0 8 0.548465205122 61 87 0 8 0.517111404268 61 90 0 8 0.487456682585 61 98 0 8 0.503308706264 61 99 0 8 0.520307741926 61 102 0 8 0.477483810582 64 75 0 8 0.643246380047 64 76 0 8 0.633000914375 64 79 0 8 0.478827338045 64 84 0 8 0.454360583728 64 87 0 8 0.579469581775 64 90 0 8 0.566691345483 64 91 0 8 0.462293180432 64 98 0 8 0.582198437863 64 99 0 8 0.59156696575 64 102 0 8 0.578946687196 64 178 0 8 0.44175312928 64 181 0 8 0.458218952696 65 75 0 8 0.625495198429 65 76 0 8 0.612559004399 65 79 0 8 0.467821772554 65 84 0 8 0.466379531131 65 87 0 8 0.564627001257 65 90 0 8 0.54011110492 65 91 0 8 0.457296417219 65 98 0 8 0.560623589631 65 99 0 8 0.576550087038 65 102 0 8 0.550881840485 65 178 0 8 0.445002374042 65 181 0 8 0.471266614701 69 102 0 8 0.432629726442 75 84 0 8 0.506221405063 75 87 0 8 0.607531590888 75 90 0 8 0.597149954753 75 91 0 8 0.483180986715 75 98 0 8 0.588097342341 75 99 0 8 0.592215137156 75 102 0 8 0.598146722545 76 87 0 8 0.624743537471 76 88 0 8 0.46372076493 76 90 0 8 0.593974459544 76 91 0 8 0.515163893887 76 96 0 8 0.469355018578 76 98 0 8 0.595526802828 76 99 0 8 0.604034733386 76 100 0 8 0.448536565662 76 101 0 8 0.506256864005 76 102 0 8 0.615827095522 76 117 0 8 0.467162210928 76 171 0 8 0.425401229228 76 178 0 8 0.462642015248 76 181 0 8 0.461127652791 79 90 0 8 0.520456280854 79 91 0 8 0.427366177613 79 98 0 8 0.52339405075 79 99 0 8 0.570634842105 79 102 0 8 0.54189815592 84 98 0 8 0.483091035189 84 99 0 8 0.511499721844 84 102 0 8 0.435679622812 87 96 0 8 0.534725737138 87 98 0 8 0.64916162498 87 99 0 8 0.653715165279 87 100 0 8 0.544537567288 87 101 0 8 0.562824104321 87 102 0 8 0.642957698665 87 103 0 8 0.420501895109 87 117 0 8 0.458001885525 87 178 0 8 0.450627028382 87 181 0 8 0.464755543837 88 98 0 8 0.539113455853 88 99 0 8 0.566446238649 88 100 0 8 0.516979369666 88 101 0 8 0.47757398021 88 102 0 8 0.51580206113 90 99 0 8 0.624324132443 90 102 0 8 0.619541825766 90 178 0 8 0.429829220445 90 181 0 8 0.462419229987 91 102 0 8 0.608697210055 91 181 0 8 0.428540724729 98 109 0 8 0.452363565752 98 110 0 8 0.465165937738 98 113 0 8 0.454186929991 98 117 0 8 0.477776861874 98 118 0 8 0.429921255854 98 120 0 8 0.420228244549 98 178 0 8 0.470653461228 98 181 0 8 0.496703211944 98 182 0 8 0.430534825243 99 109 0 8 0.46594568615 99 110 0 8 0.529649190023 99 113 0 8 0.498967518663 99 117 0 8 0.557252008955 99 118 0 8 0.455125745506 99 120 0 8 0.466511443456 99 171 0 8 0.42189982086 99 178 0 8 0.525231532295 99 181 0 8 0.552731149568 99 182 0 8 0.511079280104 99 187 0 8 0.450659588458 102 113 0 8 0.512935809977 102 117 0 8 0.586321679497 102 118 0 8 0.435723914589 102 120 0 8 0.512182112457 102 171 0 8 0.464515170267 102 178 0 8 0.519245963668 102 181 0 8 0.549114161312 102 182 0 8 0.505491963973 102 187 0 8 0.464049080051 108 117 0 8 0.467689860229 109 118 0 8 0.526353826413 109 120 0 8 0.458332912961 109 121 0 8 0.428637142776 109 124 0 8 0.420861267531 109 129 0 8 0.446954472662 109 151 0 8 0.48158584632 110 120 0 8 0.445155479816 110 121 0 8 0.421886632882 117 129 0 8 0.492445993896 118 129 0 8 0.425841019417 118 151 0 8 0.463058271919 120 129 0 8 0.583206099293 120 135 0 8 0.694746049332 120 142 0 8 0.588636577376 120 151 0 8 0.540750375197 120 152 0 8 0.460666385052 120 171 0 8 0.480440463555 120 178 0 8 0.537442635812 120 181 0 8 0.470612884895 120 187 0 8 0.420083176783 121 130 0 8 0.564921129458 121 131 0 8 0.430451555111 121 135 0 8 0.552431574548 121 144 0 8 0.453220981079 121 151 0 8 0.60278741194 121 152 0 8 0.495276468582 121 164 0 8 0.462082120712 121 171 0 8 0.468132499365 121 178 0 8 0.53433345765 121 181 0 8 0.527025002307 121 182 0 8 0.456775456008 121 187 0 8 0.475689434976 121 191 0 8 0.438939497613 122 135 0 8 0.563602999372 122 144 0 8 0.444011439448 122 151 0 8 0.568309050589 122 152 0 8 0.462216964422 122 171 0 8 0.481082117774 122 178 0 8 0.479528954758 122 181 0 8 0.467839360864 122 187 0 8 0.444394203883 135 144 0 8 0.422908701237 135 151 0 8 0.44106107374 142 151 0 8 0.467824703939 142 178 0 8 0.460438464522 144 178 0 8 0.458474006623 144 181 0 8 0.441744623403 151 178 0 8 0.423390062463 152 178 0 8 0.532381746124 152 181 0 8 0.520093185698 152 182 0 8 0.433164408338 154 178 0 8 0.512990824394 154 181 0 8 0.444440986203 155 178 0 8 0.48526186535 155 181 0 8 0.429338364934 156 168 0 8 0.472168310985 156 171 0 8 0.56741032553 156 178 0 8 0.608294145483 156 181 0 8 0.597449529772 156 182 0 8 0.521749119666 156 187 0 8 0.492170142549 162 171 0 8 0.466508512071 162 178 0 8 0.494586840215 162 181 0 8 0.506109962674 164 178 0 8 0.496723474197 164 181 0 8 0.536832423276 164 182 0 8 0.473678652262 168 178 0 8 0.526876463379 168 181 0 8 0.542624599416 168 182 0 8 0.49679439208 168 187 0 8 0.424211014143 171 181 0 8 0.599121703064 171 182 0 8 0.569719776591 171 187 0 8 0.474922993134 171 191 0 8 0.469242306543 178 187 0 8 0.538527458099 END