# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qdbA 473 9.66e-01 1qdbA a.138.1.3 19688 2cunA 410 1.16e+00 1iomA 377 3.05e+00 a.103.1.1 83698 1klxA 138 3.95e+00 a.118.18.1 77440 2sas 185 4.37e+00 2sas a.39.1.5 17258 1cpt 412 5.01e+00 1cpt a.104.1.1 18968 1g8pA 350 8.85e+00 1g8pA c.37.1.20 60376 1josA 128 9.36e+00 d.52.7.1 84191 1hh8A 213 9.81e+00 1e96B a.118.8.1 61042 1e96B 203 9.93e+00 1e96B a.118.8.1 19211 1wm5A 208 1.02e+01 1qspA 165 1.27e+01 1qspA a.24.10.2 16639 2g09A 297 1.37e+01 1z2iA 358 1.58e+01 1wpuA 147 1.61e+01 1b0b 142 1.64e+01 2fal a.1.1.2 15010 1z3xA 238 1.71e+01 2bduA 297 1.75e+01 1g24A 211 1.76e+01 1g24A d.166.1.1 42270 1wmqA 147 1.77e+01 2a9kB 223 1.82e+01 1tia 279 1.83e+01 3tgl c.69.1.17 34737 1ytzT 107 1.89e+01 1a8y 367 1.91e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1gpjA 404 1.92e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1rx0A 393 1.97e+01 a.29.3.1,e.6.1.1 98007,98008 1g4uS 383 2.00e+01 1g4uS a.24.11.1,c.45.1.2 16643,32691 1flp 142 2.01e+01 1flp a.1.1.2 15011 1fzcA 87 2.18e+01 1fzcA h.1.8.1 45590 1eg3A 261 2.27e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1c02A 166 2.39e+01 1qspA a.24.10.2 16633 2bb6A 414 2.48e+01 2auaA 224 2.50e+01 2cwyA 94 2.64e+01 1alvA 173 2.81e+01 1alvA a.39.1.8 17370 1yviA 149 2.91e+01 1k6iA 352 2.95e+01 c.2.1.2 68223 1knqA 175 3.15e+01 c.37.1.17 72786 1guxA 218 3.23e+01 1guxA a.74.1.3 18388 1io1A 398 3.31e+01 1io1A e.32.1.1 62611 1y9qA 192 3.40e+01 1dt6A 473 3.43e+01 1dt6A a.104.1.1 18977 1foeA 377 3.51e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1xvhA 129 3.72e+01 2d2sA 235 3.73e+01 1dh3A 55 3.81e+01 1a02J h.1.3.1 45546 2b99A 156 3.81e+01 1k0dA 260 3.83e+01 a.45.1.1,c.47.1.5 67930,67931 1xgkA 352 3.91e+01 1ytaA 180 3.93e+01 1t6uA 117 3.94e+01 a.24.22.1 106584 1sglA 209 4.11e+01 d.124.1.1 105536 1z9fA 153 4.22e+01 1gq2A 555 4.23e+01 c.2.1.7,c.58.1.3 70308,70309 1bynA 128 4.39e+01 1rsy b.7.1.2 23193 1yppA 286 4.44e+01 1wgjA b.40.5.1 25407 1wgjA 286 4.44e+01 1wgjA b.40.5.1 25397 2trcP 217 4.45e+01 1b9yC c.47.1.6 33051 2b7eA 59 4.65e+01 1e9gA 286 4.67e+01 1wgjA b.40.5.1 59393 1necA 216 4.68e+01 1vfrA d.90.1.1 40249 8prkA 287 4.68e+01 1wgjA b.40.5.1 25395 117eA 286 4.68e+01 1wgjA b.40.5.1 25401 8prkB 287 4.69e+01 1wgjA b.40.5.1 25396 1e9gB 286 4.69e+01 1wgjA b.40.5.1 59394 1qgpA 77 4.96e+01 1qbjA a.4.5.19 16158 1qbjA 81 4.96e+01 1qbjA a.4.5.19 16155 1rsy 152 4.99e+01 1rsy b.7.1.2 23192 1s7zA 117 5.03e+01 a.159.3.1 98715 1k47A 337 5.06e+01 d.14.1.5,d.58.26.4 72040,72041 1htyA 1015 5.14e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1r6uA 437 5.14e+01 c.26.1.1 97163 1p68A 102 5.15e+01 k.8.1.1 94158 1hkhA 279 5.17e+01 c.69.1.12 90628 1utuA 108 5.18e+01 1hxkA 1015 5.18e+01 a.8.3.1,b.30.5.6,c.6.2.1 83070,83071,83072 1mla 309 5.37e+01 1mla c.19.1.1,d.58.23.1 31031,39383 2ezvA 269 5.40e+01 1k6xA 352 5.54e+01 c.2.1.2 68238 1hwwA 1015 5.54e+01 a.8.3.1,b.30.5.6,c.6.2.1 83067,83068,83069 1qwnA 1045 5.55e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1or7A 194 5.63e+01 a.4.13.2,a.177.1.1 87332,87333 1opoA 348 5.63e+01 b.121.4.7 87240 1b4pA 217 5.72e+01 a.45.1.1,c.47.1.5 83158,83159 1aipC 196 5.78e+01 1tfe a.5.2.2,d.43.1.1 58930,58931 1g6wA 261 5.80e+01 1hqoA a.45.1.1,c.47.1.5 17751,33045 1hqoA 258 5.83e+01 1hqoA a.45.1.1,c.47.1.5 17749,33043 1f3aA 222 5.89e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1pyp 285 5.93e+01 1wgjA b.40.5.1 25409 169lA 164 5.99e+01 1l92 d.2.1.3 36963 2d7vA 162 6.04e+01 1b3oA 514 6.07e+01 1ak5 c.1.5.1 28640 1ee4A 423 6.08e+01 1ee4A a.118.1.1 19128 192l 164 6.34e+01 1l92 d.2.1.3 36815 1hzgA 295 6.39e+01 1hzgA d.194.1.1 61436 1bk5A 422 6.46e+01 1bk5A a.118.1.1 19130 1n6bA 473 6.47e+01 a.104.1.1 85359 1wd7A 261 6.56e+01 1i4sA 147 6.57e+01 a.149.1.1 66026 1wwzA 159 6.72e+01 2c4jA 218 6.79e+01 1yi8A 351 6.80e+01 1bzpA 153 6.81e+01 1a6m a.1.1.2 15020 1nr6A 473 6.83e+01 a.104.1.1 92085 1l9lA 74 6.83e+01 a.64.1.1 77827 1xw5A 217 6.86e+01 1kfuS 184 6.99e+01 a.39.1.8 68574 1moh 142 7.04e+01 1flp a.1.1.2 15012 2ezl 99 7.09e+01 2ezk a.4.1.2 16026 1i1rB 181 7.17e+01 1i1rB a.26.1.1 61548 1wdcB 156 7.36e+01 1wdcB a.39.1.5 17302 1b8bA 605 7.41e+01 1b8bA 1xg7A 250 7.49e+01 2cy7A 396 7.49e+01 1b2vA 188 7.68e+01 1b2vA d.35.1.1 38532 1okcA 297 7.69e+01 f.42.1.1 93248 1b8pA 329 7.70e+01 1bmdA c.2.1.5,d.162.1.1 30147,42114 1h8mA 140 7.70e+01 1h8mA d.110.4.1 60782 1dk0A 188 7.76e+01 1b2vA d.35.1.1 38530 2ezk 99 7.85e+01 2ezk a.4.1.2 16027 1lj2A 110 8.01e+01 h.1.13.2 73926 1wa5B 530 8.05e+01 1upkA 341 8.17e+01 a.118.1.15 99758 1ewqA 765 8.19e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1ff9A 450 8.21e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1o5zA 442 8.40e+01 c.59.1.2,c.72.2.2 92530,92531 1mym 154 8.44e+01 1a6m a.1.1.2 15054 1m1jA 491 8.47e+01 h.1.8.1 74369 1wcwA 261 8.49e+01 1xq8A 140 8.56e+01 168lA 164 8.65e+01 1l92 d.2.1.3 36975 1ad6 185 8.66e+01 1guxA a.74.1.3 18390 1jfzA 154 8.72e+01 a.149.1.1 66655 1zcbA 362 8.80e+01 1k3kA 158 8.88e+01 f.1.4.1 72017 2oneA 436 8.95e+01 4enl c.1.11.1,d.54.1.1 29203,38847 1k94A 165 8.99e+01 a.39.1.8 68333