# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2sas 185 2.52e-01 2sas a.39.1.5 17258 1g24A 211 5.89e-01 1g24A d.166.1.1 42270 2a9kB 223 1.70e+00 1fzcA 87 2.15e+00 1fzcA h.1.8.1 45590 1pvaA 110 2.56e+00 1a75A a.39.1.4 17207 2trcP 217 3.03e+00 1b9yC c.47.1.6 33051 2b7eA 59 3.76e+00 1knqA 175 5.53e+00 c.37.1.17 72786 1moh 142 5.63e+00 1flp a.1.1.2 15012 1dh3A 55 5.81e+00 1a02J h.1.3.1 45546 1u8sA 192 6.87e+00 d.58.18.5,d.58.18.5 107737,107738 1b0b 142 7.84e+00 2fal a.1.1.2 15010 1z77A 200 8.02e+00 1q0bA 367 8.22e+00 c.37.1.9 95502 1x88A 359 8.40e+00 2bznA 351 8.85e+00 2atxA 194 9.02e+00 1flp 142 9.88e+00 1flp a.1.1.2 15011 1josA 128 1.02e+01 d.52.7.1 84191 1a8y 367 1.04e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1eerA 166 1.05e+01 1eerA a.26.1.2 16846 1y14A 187 1.07e+01 1icxA 155 1.11e+01 d.129.3.1 71191 1aj4 161 1.13e+01 1ncx a.39.1.5 17244 2c6qA 351 1.14e+01 2ahrA 259 1.17e+01 1ii6A 368 1.19e+01 1bg2 c.37.1.9 62413 1iomA 377 1.27e+01 a.103.1.1 83698 3ladA 476 1.32e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1vmbA 140 1.48e+01 1xg7A 250 1.52e+01 1foeA 377 1.52e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1kgsA 225 1.58e+01 a.4.6.1,c.23.1.1 68596,68597 1bo1A 416 1.61e+01 1bo1A d.143.1.2 41591 1b3oA 514 1.66e+01 1ak5 c.1.5.1 28640 1f06A 320 1.66e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1y1xA 191 1.66e+01 8prkA 287 1.69e+01 1wgjA b.40.5.1 25395 1yppA 286 1.70e+01 1wgjA b.40.5.1 25407 1wgjA 286 1.73e+01 1wgjA b.40.5.1 25397 2b3yA 888 1.74e+01 117eA 286 1.75e+01 1wgjA b.40.5.1 25401 1feuA 206 1.75e+01 1feuA b.53.1.1 59801 1k47A 337 1.75e+01 d.14.1.5,d.58.26.4 72040,72041 3dapA 320 1.79e+01 1dapA c.2.1.3,d.81.1.3 30051,39966 1k78A 149 1.83e+01 a.4.1.5,a.4.1.5 68255,68256 1e9gA 286 1.91e+01 1wgjA b.40.5.1 59393 1dt6A 473 1.98e+01 1dt6A a.104.1.1 18977 1e9gB 286 2.06e+01 1wgjA b.40.5.1 59394 1dk0A 188 2.08e+01 1b2vA d.35.1.1 38530 1ru3A 732 2.13e+01 e.26.1.3 97835 8prkB 287 2.16e+01 1wgjA b.40.5.1 25396 1xsnA 335 2.17e+01 1tuhA 156 2.19e+01 d.17.4.11 107345 1jqgA 433 2.21e+01 c.56.5.1,d.58.3.1 71791,71792 1x3kA 152 2.21e+01 1wr2A 238 2.22e+01 1rz4A 226 2.27e+01 a.4.5.53,a.118.1.18 105131,105132 2cunA 410 2.35e+01 1jmvA 141 2.39e+01 c.26.2.4 66897 1y8aA 332 2.42e+01 1rztA 331 2.46e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1fts 295 2.50e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 1cn4C 166 2.57e+01 1eerA a.26.1.2 16847 1b2vA 188 2.65e+01 1b2vA d.35.1.1 38532 1e96B 203 2.75e+01 1e96B a.118.8.1 19211 1dapA 320 2.76e+01 1dapA c.2.1.3,d.81.1.3 30053,39968 1e3aA 260 2.76e+01 1ajqA d.153.1.2 41838 2bcqA 335 2.83e+01 1hh8A 213 2.88e+01 1e96B a.118.8.1 61042 1buyA 166 2.93e+01 1eerA a.26.1.2 16848 1qbjA 81 2.96e+01 1qbjA a.4.5.19 16155 1b9xC 246 2.99e+01 1b9yC c.47.1.6 33053 1rtxA 123 3.04e+01 a.1.1.1 97827 1gk9A 260 3.11e+01 d.153.1.2 65246 1lj2A 110 3.18e+01 h.1.13.2 73926 1x67A 146 3.21e+01 1gm7A 209 3.27e+01 d.153.1.2 65302 1b9yC 246 3.31e+01 1b9yC c.47.1.6 33052 1pnkA 209 3.34e+01 1ajqA d.153.1.2 41839 1yf2A 425 3.67e+01 1p5jA 372 3.82e+01 c.79.1.1 104067 1wcv1 257 3.85e+01 2bleA 367 3.89e+01 1s7zA 117 3.91e+01 a.159.3.1 98715 1gw5S 142 3.97e+01 d.110.4.2 70633 1wpuA 147 4.13e+01 1s69A 124 4.23e+01 a.1.1.1 105305 2g2dA 193 4.23e+01 2a1jB 91 4.30e+01 1ai7A 209 4.31e+01 1ajqA d.153.1.2 41845 1r29A 127 4.34e+01 d.42.1.1 96856 1gqoH 143 4.37e+01 c.23.13.1 76302 1ff9A 450 4.40e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1bxyA 60 4.42e+01 1bxyA d.59.1.1 39525 1wm5A 208 4.43e+01 1iseA 185 4.46e+01 d.67.3.1 90691 1e1xA 299 4.50e+01 1hcl d.144.1.7 59157 1l9lA 74 4.66e+01 a.64.1.1 77827 1b7yA 350 4.68e+01 1pysA d.104.1.1 40776 1s1pA 331 4.71e+01 c.1.7.1 98350 1qgpA 77 4.80e+01 1qbjA a.4.5.19 16158 1pyp 285 4.81e+01 1wgjA b.40.5.1 25409 2fk4A 75 4.85e+01 1zgwA 139 4.90e+01 1gjsA 65 5.02e+01 1gab a.8.1.2 60578 1tzvA 142 5.04e+01 a.79.1.1 107526 1pysA 350 5.11e+01 1pysA d.104.1.1 40775 1gqoB 143 5.31e+01 c.23.13.1 76296 1xs0A 136 5.33e+01 1gqoL 143 5.36e+01 c.23.13.1 76306 1p68A 102 5.44e+01 k.8.1.1 94158 2b99A 156 5.50e+01 1zmtA 254 5.50e+01 1mioB 458 5.51e+01 1qguB c.92.2.3 35602 1gqoP 143 5.53e+01 c.23.13.1 76310 1veaA 148 5.54e+01 d.275.1.1 108529 1gqoI 143 5.57e+01 c.23.13.1 76303 1gqoV 143 5.58e+01 c.23.13.1 76316 2hddA 61 5.60e+01 2hddA a.4.1.1 15971 1ajqA 209 5.63e+01 1ajqA d.153.1.2 41840 1ytzT 107 5.66e+01 2gk4A 232 5.68e+01 1pk5A 248 5.75e+01 a.123.1.1 88139 1r71A 178 5.82e+01 a.4.14.1 104823 1n6bA 473 5.84e+01 a.104.1.1 85359 1gqoM 143 5.87e+01 c.23.13.1 76307 1jvpP 298 5.92e+01 d.144.1.7 67371 1yviA 149 5.98e+01 1rkuA 206 6.02e+01 c.108.1.11 97627 1qgoA 264 6.16e+01 1qgoA c.92.1.2 35596 1xk4C 113 6.16e+01 1gqoE 143 6.17e+01 c.23.13.1 76299 1t64A 377 6.27e+01 c.42.1.2 106543 1wmqA 147 6.27e+01 1gqoQ 143 6.33e+01 c.23.13.1 76311 1zk8A 183 6.34e+01 1in4A 334 6.35e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1lxyA 409 6.42e+01 d.126.1.4 91154 1gqoC 143 6.42e+01 c.23.13.1 76297 1gqoD 143 6.42e+01 c.23.13.1 76298 1qzgA 187 6.47e+01 b.40.4.3 96643 1gqoG 143 6.53e+01 c.23.13.1 76301 1go4A 205 6.57e+01 d.135.1.1 70292 1hv8A 367 6.58e+01 1hv8A c.37.1.19,c.37.1.19 32405,32406 1x79A 98 6.61e+01 1gqoY 143 6.67e+01 c.23.13.1 76318 1sz9A 144 6.68e+01 a.118.9.4 106139 1gqoK 143 6.75e+01 c.23.13.1 76305 1gqoO 143 6.80e+01 c.23.13.1 76309 1scmB 145 6.96e+01 1wdcB a.39.1.5 17304 1dd5A 185 7.06e+01 1dd5A d.67.3.1 39564 1s9rA 410 7.21e+01 d.126.1.4 98758 1xvhA 129 7.22e+01 1gqoN 143 7.23e+01 c.23.13.1 76308 1u8bA 133 7.24e+01 1ojqA 212 7.37e+01 d.166.1.1 93146 1gqoT 143 7.37e+01 c.23.13.1 76314 2acjA 66 7.37e+01 1aqdA 192 7.56e+01 1iakA b.1.1.2,d.19.1.1 21585,38159 1rxwA 336 7.60e+01 a.60.7.1,c.120.1.2 98059,98060 1kr5A 226 7.75e+01 c.66.1.7 68847 1r4vA 171 7.79e+01 a.197.1.1 97049 1guxA 218 7.88e+01 1guxA a.74.1.3 18388 2bnkA 67 7.89e+01 1jf2A 195 7.91e+01 1ej3A a.39.1.5 62930 1wdcB 156 8.00e+01 1wdcB a.39.1.5 17302 2acaA 189 8.03e+01 1gqoS 143 8.11e+01 c.23.13.1 76313 1gesA 450 8.13e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1pwxA 254 8.19e+01 c.2.1.2 95262 2cwaA 263 8.22e+01 1du0A 57 8.27e+01 2hddA a.4.1.1 15974 1cx4A 305 8.31e+01 b.82.3.2,b.82.3.2 59099,59100 1gz8A 299 8.42e+01 d.144.1.7 83405 1colA 204 8.47e+01 1a87 f.1.1.1 43378 1alvA 173 8.51e+01 1alvA a.39.1.8 17370 1gqoF 143 8.62e+01 c.23.13.1 76300 1ab4 477 8.63e+01 1ab4 e.11.1.1 43251 2mgg 154 8.63e+01 1a6m a.1.1.2 15069 2spo 154 8.64e+01 1a6m a.1.1.2 15053 1mg4A 113 8.72e+01 d.15.11.1 84953 2c5rA 67 8.73e+01 1mod 154 8.76e+01 1a6m a.1.1.2 15107 2gasA 307 8.77e+01 1gqoR 143 8.81e+01 c.23.13.1 76312 1xeeA 91 8.86e+01 1psrA 100 8.88e+01 1psrA a.39.1.2 17180 1hddC 61 8.94e+01 2hddA a.4.1.1 15978 1gqoU 143 8.95e+01 c.23.13.1 76315 1ssqA 267 8.99e+01 b.81.1.6 105993