# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qdbA 473 6.24e-01 1qdbA a.138.1.3 19688 1klxA 138 2.46e+00 a.118.18.1 77440 2sas 185 3.40e+00 2sas a.39.1.5 17258 1g8pA 350 6.21e+00 1g8pA c.37.1.20 60376 1b0b 142 7.40e+00 2fal a.1.1.2 15010 1wm5A 208 8.43e+00 1hh8A 213 8.49e+00 1e96B a.118.8.1 61042 1flp 142 8.71e+00 1flp a.1.1.2 15011 1moh 142 8.71e+00 1flp a.1.1.2 15012 1e96B 203 8.74e+00 1e96B a.118.8.1 19211 1cpt 412 9.93e+00 1cpt a.104.1.1 18968 1josA 128 1.04e+01 d.52.7.1 84191 2cunA 410 1.29e+01 1z3xA 238 1.44e+01 1okcA 297 1.45e+01 f.42.1.1 93248 1ytzT 107 1.47e+01 1c02A 166 1.64e+01 1qspA a.24.10.2 16633 1g24A 211 1.65e+01 1g24A d.166.1.1 42270 1g4uS 383 1.73e+01 1g4uS a.24.11.1,c.45.1.2 16643,32691 2a9kB 223 1.78e+01 1iomA 377 1.92e+01 a.103.1.1 83698 1nr6A 473 1.95e+01 a.104.1.1 92085 1qr6A 584 1.99e+01 1qr6A c.2.1.7,c.58.1.3 30293,33941 1tia 279 2.38e+01 3tgl c.69.1.17 34737 1n6bA 473 2.50e+01 a.104.1.1 85359 1qspA 165 2.53e+01 1qspA a.24.10.2 16639 2trcP 217 2.56e+01 1b9yC c.47.1.6 33051 1wpuA 147 2.60e+01 1fzcA 87 2.66e+01 1fzcA h.1.8.1 45590 2bduA 297 2.71e+01 1io1A 398 2.82e+01 1io1A e.32.1.1 62611 1aipC 196 2.88e+01 1tfe a.5.2.2,d.43.1.1 58930,58931 2cwyA 94 3.11e+01 1rx0A 393 3.11e+01 a.29.3.1,e.6.1.1 98007,98008 2d7vA 162 3.19e+01 2b7eA 59 3.20e+01 1xvhA 129 3.27e+01 1or7A 194 3.36e+01 a.4.13.2,a.177.1.1 87332,87333 1knqA 175 3.41e+01 c.37.1.17 72786 1alvA 173 3.52e+01 1alvA a.39.1.8 17370 1yppA 286 3.56e+01 1wgjA b.40.5.1 25407 1e9gA 286 3.56e+01 1wgjA b.40.5.1 59393 1e9gB 286 3.59e+01 1wgjA b.40.5.1 59394 1wmqA 147 3.79e+01 1rsy 152 3.79e+01 1rsy b.7.1.2 23192 1hzgA 295 3.80e+01 1hzgA d.194.1.1 61436 1z9fA 153 3.80e+01 1hq0A 295 3.81e+01 1hzgA d.194.1.1 61122 1dh3A 55 4.02e+01 1a02J h.1.3.1 45546 8prkA 287 4.04e+01 1wgjA b.40.5.1 25395 2d2sA 235 4.14e+01 8prkB 287 4.20e+01 1wgjA b.40.5.1 25396 1k0dA 260 4.21e+01 a.45.1.1,c.47.1.5 67930,67931 117eA 286 4.24e+01 1wgjA b.40.5.1 25401 1a8y 367 4.30e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1utuA 108 4.33e+01 1z2iA 358 4.43e+01 1g6wA 261 4.43e+01 1hqoA a.45.1.1,c.47.1.5 17751,33045 1dt6A 473 4.49e+01 1dt6A a.104.1.1 18977 1ytaA 180 4.54e+01 1bynA 128 4.54e+01 1rsy b.7.1.2 23193 1xssA 225 4.56e+01 1guxA 218 4.65e+01 1guxA a.74.1.3 18388 1f3aA 222 4.71e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1gpjA 404 4.74e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1veaA 148 4.76e+01 d.275.1.1 108529 1foeA 377 4.78e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1wgjA 286 4.99e+01 1wgjA b.40.5.1 25397 1b2vA 188 5.06e+01 1b2vA d.35.1.1 38532 1dk0A 188 5.06e+01 1b2vA d.35.1.1 38530 1a26 361 5.13e+01 1a26 a.41.1.1,d.166.1.2 17412,42274 1avmA 201 5.13e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1mrzA 293 5.18e+01 b.43.5.1,c.26.1.3 91452,91453 1yviA 149 5.32e+01 1s7zA 117 5.34e+01 a.159.3.1 98715 1ad6 185 5.42e+01 1guxA a.74.1.3 18390 1h8mA 140 5.45e+01 1h8mA d.110.4.1 60782 1i1rB 181 5.46e+01 1i1rB a.26.1.1 61548 1b4pA 217 5.48e+01 a.45.1.1,c.47.1.5 83158,83159 1w27A 714 5.65e+01 1q3eA 207 5.66e+01 b.82.3.2 95669 1eg3A 261 5.85e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2dddA 225 6.07e+01 1kfuS 184 6.13e+01 a.39.1.8 68574 1pyp 285 6.15e+01 1wgjA b.40.5.1 25409 1u6zA 513 6.19e+01 1wa5B 530 6.21e+01 1xg7A 250 6.22e+01 1qbjA 81 6.28e+01 1qbjA a.4.5.19 16155 1exnB 290 6.32e+01 1exnA a.60.7.1,c.120.1.2 18089,33359 1j0mA 752 6.32e+01 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1b3oA 514 6.34e+01 1ak5 c.1.5.1 28640 1fo4A 1332 6.37e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 17910,37695,38586,40227,41416,41758 1k47A 337 6.40e+01 d.14.1.5,d.58.26.4 72040,72041 1efyA 350 6.40e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1xo1A 291 6.46e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1ur3M 319 6.62e+01 c.1.7.1 99806 2g09A 297 6.66e+01 1exnA 290 6.67e+01 1exnA a.60.7.1,c.120.1.2 18088,33358 2a11A 242 6.67e+01 1k6iA 352 6.72e+01 c.2.1.2 68223 1mbd 153 6.77e+01 1a6m a.1.1.2 15033 2gnxA 365 6.78e+01 1bk6A 422 6.88e+01 1bk5A a.118.1.1 19133 1tmxA 293 7.02e+01 1qgpA 77 7.09e+01 1qbjA a.4.5.19 16158 2bb6A 414 7.14e+01 1i4sA 147 7.15e+01 a.149.1.1 66026 1n08A 163 7.29e+01 b.43.5.1 79730 1y7rA 133 7.30e+01 1og6A 298 7.39e+01 c.1.7.1 86984 1bsmA 201 7.45e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1ixmB 192 7.61e+01 1ixmA d.123.1.1 41115 1t6uA 117 7.69e+01 a.24.22.1 106584 1mgn 154 7.90e+01 1a6m a.1.1.2 15097 2ezvA 269 7.91e+01 1ut8A 291 7.98e+01 a.60.7.1,c.120.1.2 99908,99909 1mod 154 8.01e+01 1a6m a.1.1.2 15107 1l9lA 74 8.04e+01 a.64.1.1 77827 1x1iA 752 8.04e+01 1r6uA 437 8.11e+01 c.26.1.1 97163 1ewqA 765 8.18e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1b3bA 415 8.38e+01 1hwyA c.2.1.7,c.58.1.1 30244,33892 1mym 154 8.43e+01 1a6m a.1.1.2 15054 1qhdA 398 8.52e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1mlg 154 8.57e+01 1a6m a.1.1.2 15104 1a6m 151 8.64e+01 1a6m a.1.1.2 15018 1a6g 151 8.71e+01 1a6m a.1.1.2 15021 2ezl 99 8.73e+01 2ezk a.4.1.2 16026 1zmtA 254 8.75e+01 1upkA 341 8.84e+01 a.118.1.15 99758 1bzpA 153 8.88e+01 1a6m a.1.1.2 15020 1mll 154 8.93e+01 1a6m a.1.1.2 15057