# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2trcP 217 7.51e-01 1b9yC c.47.1.6 33051 1g24A 211 2.31e+00 1g24A d.166.1.1 42270 2sas 185 2.47e+00 2sas a.39.1.5 17258 2a9kB 223 3.99e+00 1dh3A 55 6.92e+00 1a02J h.1.3.1 45546 2cujA 108 7.86e+00 1e4uA 78 8.32e+00 1e4uA g.44.1.1 59231 1bccD 241 8.50e+00 1be3D a.3.1.3,f.23.11.1 15959,43698 1ugpA 203 8.96e+00 d.149.1.1 107831 2b99A 156 9.74e+00 1ireA 204 1.03e+01 d.149.1.1 76769 2auaA 224 1.07e+01 2atxA 194 1.19e+01 1moh 142 1.19e+01 1flp a.1.1.2 15012 1flp 142 1.24e+01 1flp a.1.1.2 15011 1pvaA 110 1.28e+01 1a75A a.39.1.4 17207 1bo1A 416 1.30e+01 1bo1A d.143.1.2 41591 1uz3A 102 1.38e+01 1ru3A 732 1.53e+01 e.26.1.3 97835 1fzcA 87 1.79e+01 1fzcA h.1.8.1 45590 1icxA 155 1.84e+01 d.129.3.1 71191 1ppjD 241 1.84e+01 a.3.1.3,f.23.11.1 104258,104259 2b7eA 59 1.87e+01 2a1jB 91 1.91e+01 1vorW 173 2.02e+01 2fs3A 282 2.09e+01 1utuA 108 2.25e+01 1eal 127 2.46e+01 1hmt b.60.1.2 27227 1lj2A 110 2.52e+01 h.1.13.2 73926 1b0b 142 2.64e+01 2fal a.1.1.2 15010 1r29A 127 2.73e+01 d.42.1.1 96856 1yviA 149 2.80e+01 1fh6A 282 2.94e+01 1fh6A 1tetL 216 2.98e+01 32c2A b.1.1.1,b.1.1.2 19902,20996 1y9wA 140 3.05e+01 1k9uA 78 3.09e+01 a.39.1.10 84348 2occH 85 3.24e+01 2occH a.51.1.1 17796 1be3D 241 3.31e+01 1be3D a.3.1.3,f.23.11.1 15955,43666 2kinA 238 3.34e+01 1bg2 c.37.1.9 32190 1xvhA 129 3.39e+01 1x88A 359 3.48e+01 1ng2A 193 3.50e+01 b.34.2.1,b.34.2.1 85660,85661 1ov3A 138 3.56e+01 b.34.2.1,b.34.2.1 87451,87452 1tmxA 293 3.66e+01 1ohgA 282 3.67e+01 d.183.1.1 93018 1z9bA 135 3.67e+01 2b3yA 888 3.87e+01 1eikA 77 3.98e+01 1eikA d.78.1.1 39751 1qgpA 77 4.04e+01 1qbjA a.4.5.19 16158 1bdyA 123 4.04e+01 1bdyA b.7.1.1 23190 3ladA 476 4.05e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1aj4 161 4.18e+01 1ncx a.39.1.5 17244 2ezl 99 4.33e+01 2ezk a.4.1.2 16026 2ezk 99 4.38e+01 2ezk a.4.1.2 16027 1v54H 85 4.42e+01 a.51.1.1 100329 1jyhA 157 4.44e+01 d.60.1.3 71956 1wpuA 147 4.50e+01 1qbjA 81 4.70e+01 1qbjA a.4.5.19 16155 1ii6A 368 4.75e+01 1bg2 c.37.1.9 62413 1kobA 387 4.76e+01 1tkiA d.144.1.7 41640 1gdeA 389 4.77e+01 c.67.1.1 60456 1gd9A 389 4.79e+01 c.67.1.1 60454 2gnxA 365 5.04e+01 1vmbA 140 5.06e+01 1josA 128 5.06e+01 d.52.7.1 84191 1ytzT 107 5.07e+01 1vj7A 393 5.58e+01 a.211.1.1,d.218.1.8 100801,100802 1buyA 166 5.60e+01 1eerA a.26.1.2 16848 1feuA 206 5.80e+01 1feuA b.53.1.1 59801 1h6qA 168 5.82e+01 1h6qA b.88.1.2 60692 1mm4A 170 5.82e+01 f.4.1.2 79294 2cunA 410 6.13e+01 1b9xC 246 6.22e+01 1b9yC c.47.1.6 33053 1q0bA 367 6.37e+01 c.37.1.9 95502 1pmzA 86 6.38e+01 a.39.1.10 104195 1c3gA 170 6.57e+01 1c3gA b.4.1.1,b.4.1.1 22831,22832 1pbjA 125 6.64e+01 d.37.1.1,d.37.1.1 94414,94415 1kk8B 139 6.68e+01 a.39.1.5 77430 1zbdB 134 6.72e+01 1zbdB g.50.1.1 45359 1oaoC 729 6.73e+01 e.26.1.3 86746 1z77A 200 6.87e+01 1p68A 102 7.08e+01 k.8.1.1 94158 2fk4A 75 7.12e+01 1wgjA 286 7.24e+01 1wgjA b.40.5.1 25397 1favC 33 7.41e+01 1alvA 173 7.44e+01 1alvA a.39.1.8 17370 1oqyA 368 7.46e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1yrkA 126 7.49e+01 1e9gB 286 7.55e+01 1wgjA b.40.5.1 59394 1mjgM 729 7.56e+01 e.26.1.3 79204 1ad6 185 7.63e+01 1guxA a.74.1.3 18390 2a74B 188 7.63e+01 1t6sA 162 7.66e+01 1knqA 175 7.71e+01 c.37.1.17 72786 1wdcB 156 7.81e+01 1wdcB a.39.1.5 17302 1jqgA 433 7.86e+01 c.56.5.1,d.58.3.1 71791,71792 2achA 360 7.87e+01 1c8oA e.1.1.1 42626 1vicA 262 7.96e+01 c.68.1.13 100756 1scmB 145 8.05e+01 1wdcB a.39.1.5 17304 2hddA 61 8.07e+01 2hddA a.4.1.1 15971 117eA 286 8.46e+01 1wgjA b.40.5.1 25401 1x3kA 152 8.49e+01 1zb1A 392 8.63e+01 1ra6A 461 8.64e+01 e.8.1.4 104879 1zk8A 183 8.75e+01 1gw5S 142 8.80e+01 d.110.4.2 70633 8prkB 287 8.86e+01 1wgjA b.40.5.1 25396 1zhxA 438 8.87e+01 1ff9A 450 8.92e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 2dlbA 80 8.92e+01 1lshB 319 8.93e+01 f.7.1.1 74245 1hddC 61 8.95e+01 2hddA a.4.1.1 15978