# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tmxA 293 5.66e-01 1cqxA 403 6.05e-01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1dc1A 323 8.58e-01 1dc1A c.52.1.11 33321 1g5aA 628 1.24e+00 b.71.1.1,c.1.8.1 65152,65153 1f7lA 121 1.53e+00 1f7lA d.150.1.2 59666 1p5zB 263 2.03e+00 c.37.1.1 87815 1josA 128 2.20e+00 d.52.7.1 84191 1mzbA 136 2.35e+00 a.4.5.42 91497 1b0b 142 2.69e+00 2fal a.1.1.2 15010 1psrA 100 4.09e+00 1psrA a.39.1.2 17180 1hw1A 239 4.33e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1a32 88 4.82e+00 1a32 a.16.1.2 16384 1b4pA 217 4.87e+00 a.45.1.1,c.47.1.5 83158,83159 1a8y 367 4.95e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1ta8A 332 5.02e+00 1rl0A 255 5.09e+00 1fvkA 189 7.85e+00 1fvkA c.47.1.13 90351 1gd0A 122 8.22e+00 1dptA d.80.1.3 39834 1i60A 278 8.38e+00 c.1.15.4 71118 1q5zA 177 8.69e+00 a.196.1.1 95954 1k2xA 177 8.98e+00 d.153.1.5 90929 1no5A 114 9.31e+00 d.218.1.5 92014 1lo7A 141 9.88e+00 d.38.1.1 74144 1amx 180 1.05e+01 1amx b.2.3.1 22410 1luzA 88 1.12e+01 b.40.4.5 74271 2gnxA 365 1.15e+01 1lniA 96 1.21e+01 d.1.1.2 74046 1s29A 92 1.21e+01 a.4.5.46 98373 1dlwA 116 1.25e+01 1dlyA a.1.1.1 14982 1lq9A 112 1.27e+01 d.58.4.3 78129 1q2hA 69 1.32e+01 a.34.4.1 104498 1smbA 154 1.38e+01 d.111.1.1 105756 1eazA 125 1.43e+01 b.55.1.1 70113 1qf8A 182 1.52e+01 1qf8A g.41.4.1 45212 1i0rA 169 1.53e+01 1i0rA b.45.1.2 61489 1obfO 335 1.56e+01 c.2.1.3,d.81.1.1 86768,86769 1q92A 197 1.56e+01 c.108.1.8 96250 1mba 147 1.58e+01 2fal a.1.1.2 15149 1f60B 94 1.59e+01 1b64 d.58.12.1 39307 1eg2A 319 1.61e+01 1eg2A c.66.1.11 34249 1e9gA 286 1.71e+01 1wgjA b.40.5.1 59393 1k2xB 143 1.72e+01 1p5dX 463 1.73e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1jtvA 327 1.80e+01 c.2.1.2 84230 1akhA 61 1.81e+01 1akhA a.4.1.1 15980 1jsdB 176 1.90e+01 h.3.1.1 63259 1dk8A 147 1.93e+01 1agrE a.91.1.1 18548 1nwwA 149 1.94e+01 d.17.4.8 86306 2ci9A 102 1.98e+01 1molA 94 2.02e+01 1molA d.17.1.1 37988 1kr4A 125 2.16e+01 d.58.5.2 72889 1b3tA 147 2.17e+01 1b3tA d.58.8.1 39228 1ek6A 348 2.22e+01 1xel c.2.1.2 29800 1o9rA 162 2.23e+01 a.25.1.1 86706 1o7nB 194 2.27e+01 d.17.4.4 81164 1r1tA 122 2.28e+01 a.4.5.5 104769 1eaqA 140 2.29e+01 b.2.5.6 76144 1tukA 67 2.33e+01 1l9lA 74 2.41e+01 a.64.1.1 77827 1pmi 440 2.45e+01 1pmi b.82.1.3 28114 1alvA 173 2.47e+01 1alvA a.39.1.8 17370 1b3uA 588 2.50e+01 1b3uA a.118.1.2 19135 1avqA 228 2.54e+01 1avqA c.52.1.13 33326 1s9rA 410 2.56e+01 d.126.1.4 98758 1cqmA 101 2.61e+01 1ris d.58.14.1 39321 1ezwA 349 2.65e+01 1ezwA c.1.16.3 29558 1mdc 133 2.82e+01 1hmt b.60.1.2 27198 1b63A 333 2.86e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1qs1A 462 2.87e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1dg6A 191 2.89e+01 1d4vB b.22.1.1 23883 1qo7A 394 2.96e+01 1qo7A c.69.1.11 34697 1q1fA 151 3.03e+01 a.1.1.2 104476 2ciaA 102 3.05e+01 1jx4A 352 3.07e+01 d.240.1.1,e.8.1.7 90378,90379 1g8mA 593 3.19e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1tt8A 164 3.19e+01 1e1hA 287 3.22e+01 d.92.1.7 83167 1q0rA 298 3.35e+01 c.69.1.28 95508 1as4B 37 3.46e+01 1as4B 1lc5A 364 3.54e+01 c.67.1.1 73827 1dowA 205 3.57e+01 1dovA a.24.9.1 16626 1b24A 188 3.60e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1jhfA 202 3.64e+01 a.4.5.2,b.87.1.1 63057,63058 1pkhA 204 3.65e+01 b.85.4.1 94832 1a8d 452 3.78e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1adt 356 3.81e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1euwA 152 3.85e+01 1dupA b.85.4.1 28349 1brt 277 3.86e+01 1brt c.69.1.12 34699 1aisA 182 3.87e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1g6xA 58 3.98e+01 1bpi g.8.1.1 60320 1amuA 563 4.06e+01 1amuA e.23.1.1 43351 1ojhA 65 4.11e+01 a.214.1.1 103976 1r5rA 119 4.17e+01 a.39.2.1 97104 1i58A 189 4.32e+01 1b3qA d.122.1.3 61773 1rjdA 334 4.33e+01 c.66.1.37 97558 1fobA 334 4.34e+01 c.1.8.3 83255 1a6q 382 4.40e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1pbjA 125 4.46e+01 d.37.1.1,d.37.1.1 94414,94415 1kjqA 391 4.51e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1gvfA 286 4.63e+01 c.1.10.2 70599 1g8qA 90 4.67e+01 1g8qA a.135.1.1 19621 1co6A 107 4.68e+01 1ycc a.3.1.1 15894 1af7 274 4.72e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1h7cA 108 4.85e+01 a.7.5.1 70914 1i4jA 110 4.94e+01 d.55.1.1 76734 1ayaA 101 4.97e+01 1qadA d.93.1.1 40460 1k92A 455 5.01e+01 c.26.2.1,d.210.1.1 68325,68326 12asA 330 5.08e+01 12asA d.104.1.1 40783 1k3yA 221 5.09e+01 a.45.1.1,c.47.1.5 77245,77246 1m1nB 522 5.38e+01 c.92.2.3 78418 1hnjA 317 5.40e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1iuqA 367 5.41e+01 c.112.1.1 90703 1qhoA 686 5.48e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2cfuA 658 5.61e+01 1jndA 420 5.66e+01 c.1.8.5,d.26.3.1 71757,71758 1d0dA 60 5.73e+01 1kigI g.8.1.2 44566 1nkpA 88 5.76e+01 a.38.1.1 80573 1nq7A 244 5.78e+01 a.123.1.1 92047 1aquA 297 5.80e+01 1aquA c.37.1.5 31942 1aky 221 5.87e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1ii5A 233 5.88e+01 c.94.1.1 62412 1nkd 65 5.92e+01 1nkd a.30.1.1 16974 1hx6A 394 5.94e+01 1cjdA b.121.2.1,b.121.2.1 58995,58996 1fyeA 229 5.98e+01 1fyeA c.23.16.4 31477 1m9zA 111 6.24e+01 g.7.1.3 78881 1h0hB 214 6.31e+01 d.58.1.5 76437 1s5aA 150 6.34e+01 d.17.4.10 98525 1pwxA 254 6.35e+01 c.2.1.2 95262 1ty9A 222 6.35e+01 1d8wA 426 6.37e+01 1de5A c.1.15.2 29394 1m93B 245 6.40e+01 1b4fA 82 6.41e+01 1b4fA a.60.1.2 17934 1jo0A 98 6.41e+01 d.68.4.1 77140 1qtnA 164 6.44e+01 1pauA c.17.1.1 30999 1oxjA 173 6.44e+01 a.60.1.2,a.118.1.13 87517,87518 1gttA 429 6.44e+01 d.177.1.1,d.177.1.1 70529,70530 1i0vA 104 6.53e+01 9rnt d.1.1.4 36054 1rkuA 206 6.56e+01 c.108.1.11 97627 1iirA 415 6.75e+01 1iirA c.87.1.5 62453 1jigA 146 6.82e+01 a.25.1.1 71685 1q9uA 130 6.91e+01 d.129.7.1 96314 1agqA 135 6.95e+01 1agqA g.17.1.2 44789 1axn 323 7.06e+01 1avc a.65.1.1 18149 1nofA 383 7.16e+01 b.71.1.2,c.1.8.3 92020,92021 1f86A 115 7.17e+01 1etb1 b.3.4.1 59689 1a8o 70 7.18e+01 1a8o a.28.3.1 16953 1a8s 273 7.20e+01 1brt c.69.1.12 34710 1gvp 87 7.25e+01 1gvp b.40.4.7 25369 1k6iA 352 7.29e+01 c.2.1.2 68223 1a4iA 301 7.41e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1nwzA 125 7.46e+01 d.110.3.1 86370 1lfpA 249 7.66e+01 e.39.1.1 73885 1jl1A 155 7.66e+01 c.55.3.1 66821 1pa7A 130 7.69e+01 a.40.1.1 94410 1zoiA 276 7.72e+01 1mnaA 298 7.72e+01 c.69.1.22 79322 1odmA 331 7.73e+01 b.82.2.1 86875 1l8bA 190 7.78e+01 d.86.1.1 73683 1aocA 175 7.80e+01 1aocA g.17.1.5 44817 1kngA 156 7.86e+01 c.47.1.10 72777 1lwbA 122 7.89e+01 a.133.1.3 84728 1qw2A 102 7.90e+01 d.249.1.1 96456 1bupA 386 7.92e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1nu4A 97 7.98e+01 d.58.7.1 80731 1tjxA 159 8.00e+01 1oqjA 97 8.01e+01 d.217.1.1 93417 1dk0A 188 8.05e+01 1b2vA d.35.1.1 38530 1dozA 309 8.07e+01 1ak1 c.92.1.1 35592 1eluA 390 8.07e+01 1elqA c.67.1.3 34434 1e1hB 174 8.09e+01 1aym1 285 8.20e+01 1aym1 1afwA 393 8.20e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1kjwA 295 8.32e+01 b.34.2.1,c.37.1.1 68643,68644 1r26A 125 8.34e+01 c.47.1.1 96847 1b2pA 119 8.36e+01 1b2pA b.78.1.1 27998 1eokA 290 8.44e+01 1eokA c.1.8.5 28991 1oygA 447 8.53e+01 b.67.2.2 93726 1pq7A 224 8.57e+01 b.47.1.2 95002 1n08A 163 8.60e+01 b.43.5.1 79730 1aoy 78 8.67e+01 1aoy a.4.5.3 16087 1sluA 142 8.80e+01 1sluA b.16.1.1 23685 1oz2A 331 8.90e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783