# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b0b 142 6.91e-01 2fal a.1.1.2 15010 1josA 128 1.34e+00 d.52.7.1 84191 1e9gA 286 2.30e+00 1wgjA b.40.5.1 59393 1tmxA 293 2.58e+00 1iomA 377 2.70e+00 a.103.1.1 83698 1qopB 396 3.13e+00 2tysB c.79.1.1 35270 1a8y 367 3.15e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1pbjA 125 3.25e+00 d.37.1.1,d.37.1.1 94414,94415 1hh8A 213 4.45e+00 1e96B a.118.8.1 61042 1dk0A 188 4.55e+00 1b2vA d.35.1.1 38530 1mla 309 4.74e+00 1mla c.19.1.1,d.58.23.1 31031,39383 1k3yA 221 5.86e+00 a.45.1.1,c.47.1.5 77245,77246 1k6iA 352 5.90e+00 c.2.1.2 68223 1l9lA 74 6.27e+00 a.64.1.1 77827 1it2A 146 6.70e+00 a.1.1.2 66365 1fs7A 485 6.99e+00 1qdbA a.138.1.3 19691 1s9rA 410 7.02e+00 d.126.1.4 98758 1a32 88 7.16e+00 1a32 a.16.1.2 16384 1rjdA 334 7.34e+00 c.66.1.37 97558 1hw1A 239 8.34e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1g5aA 628 8.36e+00 b.71.1.1,c.1.8.1 65152,65153 1rrmA 386 1.01e+01 e.22.1.2 105081 1si6X 282 1.04e+01 1a6m 151 1.05e+01 1a6m a.1.1.2 15018 1ikpA 613 1.05e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1eaqA 140 1.07e+01 b.2.5.6 76144 1alvA 173 1.07e+01 1alvA a.39.1.8 17370 1oneA 436 1.15e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1b4pA 217 1.15e+01 a.45.1.1,c.47.1.5 83158,83159 1rfyA 102 1.16e+01 1dc1A 323 1.20e+01 1dc1A c.52.1.11 33321 1f7lA 121 1.42e+01 1f7lA d.150.1.2 59666 1dlwA 116 1.53e+01 1dlyA a.1.1.1 14982 1mba 147 1.54e+01 2fal a.1.1.2 15149 1psrA 100 1.58e+01 1psrA a.39.1.2 17180 1qo7A 394 1.74e+01 1qo7A c.69.1.11 34697 1moq 368 2.12e+01 1moq c.80.1.1 35302 2cfuA 658 2.19e+01 1as4B 37 2.19e+01 1as4B 1hxiA 121 2.25e+01 1hxiA a.118.8.1 61366 1eazA 125 2.27e+01 b.55.1.1 70113 1n08A 163 2.27e+01 b.43.5.1 79730 1mtyG 162 2.29e+01 1mtyG a.23.3.1 16498 1d3vA 323 2.41e+01 1d3vA c.42.1.1 32559 1b4fA 82 2.53e+01 1b4fA a.60.1.2 17934 1llfA 534 2.55e+01 c.69.1.17 78094 1on2A 142 2.61e+01 a.4.5.24,a.76.1.1 87103,87104 1pjxA 314 2.83e+01 b.68.6.1 104167 1dowA 205 3.13e+01 1dovA a.24.9.1 16626 1k94A 165 3.61e+01 a.39.1.8 68333 1r1tA 122 3.73e+01 a.4.5.5 104769 1ek6A 348 3.79e+01 1xel c.2.1.2 29800 1d2vC 466 3.81e+01 1mhlC 1no5A 114 3.83e+01 d.218.1.5 92014 1kqpA 271 3.91e+01 c.26.2.1 72883 1mgtA 174 3.94e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1nxuA 333 4.06e+01 c.122.1.1 86389 1i4uA 181 4.18e+01 b.60.1.1 61732 1gs9A 165 4.27e+01 a.24.1.1 83313 1hz4A 373 4.30e+01 a.118.8.2 65960 1kgsA 225 4.33e+01 a.4.6.1,c.23.1.1 68596,68597 1nwwA 149 4.49e+01 d.17.4.8 86306 1kicA 339 4.76e+01 c.70.1.1 72510 1qgvA 142 4.85e+01 1qgvA c.47.1.8 33056 1nkd 65 4.90e+01 1nkd a.30.1.1 16974 16vpA 366 4.97e+01 16vpA d.180.1.1 42601 1aquA 297 5.05e+01 1aquA c.37.1.5 31942 1q92A 197 5.06e+01 c.108.1.8 96250 1p6oA 161 5.08e+01 c.97.1.2 94185 1m6kA 251 5.18e+01 e.3.1.1 78695 1pwxA 254 5.21e+01 c.2.1.2 95262 1ta8A 332 5.22e+01 1qnrA 344 5.44e+01 1qnoA c.1.8.3 28834 1orc 71 5.45e+01 1orc a.35.1.2 17054 1nofA 383 5.53e+01 b.71.1.2,c.1.8.3 92020,92021 1brt 277 5.53e+01 1brt c.69.1.12 34699 1bkrA 109 5.54e+01 1bkrA a.40.1.1 17394 1p5zB 263 5.78e+01 c.37.1.1 87815 1oaiA 59 5.89e+01 a.5.2.3 81255 1b5eA 246 5.99e+01 1b5eA d.117.1.1 41056 1tt8A 164 6.17e+01 1oxjA 173 6.18e+01 a.60.1.2,a.118.1.13 87517,87518 1rp0A 284 6.55e+01 1odmA 331 6.71e+01 b.82.2.1 86875 1go3F 107 6.89e+01 a.60.8.2 65407 1ezwA 349 6.99e+01 1ezwA c.1.16.3 29558 1e7wA 291 7.03e+01 c.2.1.2 59373 1p4oA 322 7.12e+01 d.144.1.7 87775 1fvkA 189 7.40e+01 1fvkA c.47.1.13 90351 1g61A 228 7.55e+01 1g61A d.126.1.1 41126 1sc3A 178 7.65e+01 c.17.1.1 105416 1b3uA 588 7.65e+01 1b3uA a.118.1.2 19135 1gk9A 260 7.80e+01 d.153.1.2 65246 1oz2A 331 7.85e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1eexG 173 7.94e+01 1dioG a.23.2.1 16490 1amx 180 8.02e+01 1amx b.2.3.1 22410 1ajsA 412 8.10e+01 1ajsA c.67.1.1 34276 1zoiA 276 8.26e+01 1p3dA 475 8.29e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1ornA 226 8.30e+01 a.96.1.1 87342 1akhA 61 8.34e+01 1akhA a.4.1.1 15980 1lniA 96 8.44e+01 d.1.1.2 74046 1q0pA 223 8.44e+01 c.62.1.1 95507 1jiwI 106 8.46e+01 1smpI b.61.2.1 63078 1ok7A 366 8.48e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1r5rA 119 8.57e+01 a.39.2.1 97104 1in6A 334 8.68e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1ayaA 101 8.69e+01 1qadA d.93.1.1 40460 1jtvA 327 8.81e+01 c.2.1.2 84230 1kzfA 230 8.85e+01 d.108.1.3 73354 1e1hA 287 8.86e+01 d.92.1.7 83167 1odzA 386 8.98e+01 c.1.8.3 86889