# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1josA 128 2.37e-01 d.52.7.1 84191 1b0b 142 6.60e-01 2fal a.1.1.2 15010 1tmxA 293 8.67e-01 1oneA 436 1.33e+00 4enl c.1.11.1,d.54.1.1 29200,38844 1e9gA 286 1.78e+00 1wgjA b.40.5.1 59393 1hh8A 213 1.87e+00 1e96B a.118.8.1 61042 1b4pA 217 2.17e+00 a.45.1.1,c.47.1.5 83158,83159 1alvA 173 2.63e+00 1alvA a.39.1.8 17370 1dc1A 323 2.79e+00 1dc1A c.52.1.11 33321 1psrA 100 2.98e+00 1psrA a.39.1.2 17180 1hw1A 239 3.92e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1mla 309 4.47e+00 1mla c.19.1.1,d.58.23.1 31031,39383 1dlwA 116 4.57e+00 1dlyA a.1.1.1 14982 1a6m 151 5.37e+00 1a6m a.1.1.2 15018 1dk0A 188 5.72e+00 1b2vA d.35.1.1 38530 1as4B 37 5.81e+00 1as4B 1l9lA 74 5.91e+00 a.64.1.1 77827 1rrmA 386 6.08e+00 e.22.1.2 105081 1si6X 282 6.25e+00 1fs7A 485 6.55e+00 1qdbA a.138.1.3 19691 1pa7A 130 6.67e+00 a.40.1.1 94410 1s9rA 410 7.80e+00 d.126.1.4 98758 1k3yA 221 7.91e+00 a.45.1.1,c.47.1.5 77245,77246 1rjdA 334 8.01e+00 c.66.1.37 97558 1qo7A 394 8.97e+00 1qo7A c.69.1.11 34697 1b4fA 82 9.20e+00 1b4fA a.60.1.2 17934 1n08A 163 1.07e+01 b.43.5.1 79730 1brt 277 1.10e+01 1brt c.69.1.12 34699 1iomA 377 1.12e+01 a.103.1.1 83698 1hxiA 121 1.19e+01 1hxiA a.118.8.1 61366 1zoiA 276 1.22e+01 1g5aA 628 1.39e+01 b.71.1.1,c.1.8.1 65152,65153 1eaqA 140 1.42e+01 b.2.5.6 76144 1sauA 115 1.45e+01 1a32 88 1.46e+01 1a32 a.16.1.2 16384 1mdc 133 1.63e+01 1hmt b.60.1.2 27198 1tt8A 164 1.65e+01 1no5A 114 1.67e+01 d.218.1.5 92014 1gs9A 165 1.68e+01 a.24.1.1 83313 1a8y 367 1.68e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1k6iA 352 1.70e+01 c.2.1.2 68223 1dowA 205 1.78e+01 1dovA a.24.9.1 16626 1it2A 146 1.82e+01 a.1.1.2 66365 1ikpA 613 1.86e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1p5zB 263 1.96e+01 c.37.1.1 87815 1cqxA 403 1.98e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1f7lA 121 2.02e+01 1f7lA d.150.1.2 59666 1pjxA 314 2.14e+01 b.68.6.1 104167 1rl0A 255 2.14e+01 1oxjA 173 2.20e+01 a.60.1.2,a.118.1.13 87517,87518 1hz4A 373 2.22e+01 a.118.8.2 65960 1euwA 152 2.29e+01 1dupA b.85.4.1 28349 1kqpA 271 2.35e+01 c.26.2.1 72883 2cfuA 658 2.36e+01 1r1tA 122 2.37e+01 a.4.5.5 104769 1moq 368 2.48e+01 1moq c.80.1.1 35302 1mba 147 2.51e+01 2fal a.1.1.2 15149 1ok7A 366 2.54e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1ty9A 222 2.63e+01 1ek6A 348 2.69e+01 1xel c.2.1.2 29800 1k2xB 143 2.77e+01 1rfyA 102 2.77e+01 1pbjA 125 2.83e+01 d.37.1.1,d.37.1.1 94414,94415 1ezwA 349 2.86e+01 1ezwA c.1.16.3 29558 1amx 180 2.87e+01 1amx b.2.3.1 22410 1nkd 65 2.87e+01 1nkd a.30.1.1 16974 1mtyB 384 2.91e+01 1mtyB a.25.1.2 16740 1k94A 165 2.94e+01 a.39.1.8 68333 1lniA 96 3.01e+01 d.1.1.2 74046 1qnrA 344 3.13e+01 1qnoA c.1.8.3 28834 1luzA 88 3.23e+01 b.40.4.5 74271 1nofA 383 3.42e+01 b.71.1.2,c.1.8.3 92020,92021 1jigA 146 3.43e+01 a.25.1.1 71685 1bebA 162 3.63e+01 1bebA b.60.1.1 27115 1llfA 534 3.66e+01 c.69.1.17 78094 1nxuA 333 3.80e+01 c.122.1.1 86389 1f46A 140 3.86e+01 1f46A d.129.4.1 59643 1p4oA 322 3.89e+01 d.144.1.7 87775 1odmA 331 3.89e+01 b.82.2.1 86875 1p4cA 380 3.90e+01 c.1.4.1 94100 1so7A 382 3.94e+01 1nr0A 611 3.96e+01 b.69.4.1,b.69.4.1 86078,86079 2gnxA 365 3.96e+01 1axn 323 4.10e+01 1avc a.65.1.1 18149 1fvkA 189 4.12e+01 1fvkA c.47.1.13 90351 1d2vC 466 4.27e+01 1mhlC 1a0p 290 4.40e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1g6xA 58 4.52e+01 1bpi g.8.1.1 60320 1lq9A 112 4.59e+01 d.58.4.3 78129 1q92A 197 4.61e+01 c.108.1.8 96250 1oaiA 59 4.68e+01 a.5.2.3 81255 1gvp 87 4.81e+01 1gvp b.40.4.7 25369 1r7jA 95 4.88e+01 a.4.5.49 104836 1b2pA 119 4.92e+01 1b2pA b.78.1.1 27998 16vpA 366 4.92e+01 16vpA d.180.1.1 42601 1i4uA 181 4.92e+01 b.60.1.1 61732 1pwxA 254 5.01e+01 c.2.1.2 95262 1s5aA 150 5.08e+01 d.17.4.10 98525 1h12A 405 5.15e+01 a.102.1.2 83447 1behA 187 5.16e+01 1a44 b.17.1.1 23700 1ornA 226 5.28e+01 a.96.1.1 87342 1dg6A 191 5.43e+01 1d4vB b.22.1.1 23883 1i0rA 169 5.49e+01 1i0rA b.45.1.2 61489 1on2A 142 5.53e+01 a.4.5.24,a.76.1.1 87103,87104 1adt 356 5.61e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1b65A 375 5.64e+01 1b65A d.154.1.1 42020 1orrA 347 5.73e+01 c.2.1.2 93460 1eazA 125 5.77e+01 b.55.1.1 70113 1i19A 561 5.78e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1kgsA 225 5.78e+01 a.4.6.1,c.23.1.1 68596,68597 1dk8A 147 5.80e+01 1agrE a.91.1.1 18548 1aquA 297 5.83e+01 1aquA c.37.1.5 31942 1mzbA 136 6.00e+01 a.4.5.42 91497 1b0xA 94 6.27e+01 1b4fA a.60.1.2 17933 1f60B 94 6.27e+01 1b64 d.58.12.1 39307 1jtvA 327 6.33e+01 c.2.1.2 84230 1rcqA 357 6.41e+01 b.49.2.2,c.1.6.1 104882,104883 1aym2 261 6.59e+01 1aym2 1g8mA 593 6.61e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1jiwI 106 6.61e+01 1smpI b.61.2.1 63078 1tjxA 159 6.66e+01 1m6kA 251 6.67e+01 e.3.1.1 78695 1ayaA 101 6.67e+01 1qadA d.93.1.1 40460 1hx0A 496 6.78e+01 b.71.1.1,c.1.8.1 61346,61347 1oygA 447 6.79e+01 b.67.2.2 93726 1mw9X 592 6.85e+01 e.10.1.1 91480 1mtyG 162 6.95e+01 1mtyG a.23.3.1 16498 1ofzA 312 7.04e+01 b.68.8.1 86978 1n3lA 372 7.20e+01 c.26.1.1 79966 1co6A 107 7.35e+01 1ycc a.3.1.1 15894 2evaA 307 7.39e+01 1f8eA 388 7.43e+01 2qwc b.68.1.1 59694 1jsdB 176 7.51e+01 h.3.1.1 63259 1hdhA 536 7.60e+01 c.76.1.2 65805 1af7 274 7.67e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1akhA 61 7.70e+01 1akhA a.4.1.1 15980 1bkrA 109 7.76e+01 1bkrA a.40.1.1 17394 1h0hB 214 7.80e+01 d.58.1.5 76437 1b3tA 147 7.90e+01 1b3tA d.58.8.1 39228 1d3vA 323 8.32e+01 1d3vA c.42.1.1 32559 1ix9A 205 8.44e+01 a.2.11.1,d.44.1.1 76899,76900 1acf 125 8.52e+01 3nul d.110.1.1 40882 1fo8A 343 8.54e+01 1foaA c.68.1.10 59927 1dqeA 137 8.55e+01 1dqeA a.39.2.1 17388 1b35B 255 8.55e+01 1b35B b.121.4.1 23334 1pv5A 264 8.58e+01 d.251.1.1 95150 2ci9A 102 8.59e+01 1sluA 142 8.64e+01 1sluA b.16.1.1 23685 1ta8A 332 8.70e+01 1o5kA 306 8.74e+01 c.1.10.1 92504 1oz2A 331 8.87e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1hnjA 317 8.91e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970