# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b0b 142 9.33e-01 2fal a.1.1.2 15010 1josA 128 1.21e+00 d.52.7.1 84191 1a8y 367 1.22e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1iomA 377 1.49e+00 a.103.1.1 83698 1kgsA 225 1.83e+00 a.4.6.1,c.23.1.1 68596,68597 1e9gA 286 2.20e+00 1wgjA b.40.5.1 59393 1dk0A 188 2.38e+00 1b2vA d.35.1.1 38530 1hh8A 213 3.26e+00 1e96B a.118.8.1 61042 1gk9A 260 3.50e+00 d.153.1.2 65246 1r29A 127 4.84e+00 d.42.1.1 96856 1l9lA 74 5.17e+00 a.64.1.1 77827 2gk4A 232 6.26e+00 1rkuA 206 6.63e+00 c.108.1.11 97627 1s9rA 410 7.89e+00 d.126.1.4 98758 1pwxA 254 8.91e+00 c.2.1.2 95262 1gz8A 299 9.16e+00 d.144.1.7 83405 1alvA 173 9.25e+00 1alvA a.39.1.8 17370 1mg4A 113 9.48e+00 d.15.11.1 84953 1psrA 100 9.64e+00 1psrA a.39.1.2 17180 1in6A 334 1.00e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1pbjA 125 1.12e+01 d.37.1.1,d.37.1.1 94414,94415 1rcqA 357 1.14e+01 b.49.2.2,c.1.6.1 104882,104883 1j6oA 268 1.28e+01 c.1.9.12 77088 1mba 147 1.32e+01 2fal a.1.1.2 15149 1b4fA 82 1.39e+01 1b4fA a.60.1.2 17934 1ezwA 349 1.45e+01 1ezwA c.1.16.3 29558 1oxjA 173 1.67e+01 a.60.1.2,a.118.1.13 87517,87518 1dlwA 116 1.70e+01 1dlyA a.1.1.1 14982 1a6m 151 1.81e+01 1a6m a.1.1.2 15018 1dusA 194 1.85e+01 1dusA c.66.1.4 34182 1b56 135 1.85e+01 1hmt b.60.1.2 27183 1lq9A 112 1.89e+01 d.58.4.3 78129 1on2A 142 2.03e+01 a.4.5.24,a.76.1.1 87103,87104 1k3xA 262 2.07e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1hw1A 239 2.20e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1qb7A 236 2.20e+01 1qb7A c.61.1.1 34087 1kjwA 295 2.22e+01 b.34.2.1,c.37.1.1 68643,68644 1e7wA 291 2.36e+01 c.2.1.2 59373 1jpzA 473 2.48e+01 a.104.1.1 67069 2gnxA 365 2.54e+01 1rxqA 178 2.57e+01 a.213.1.1 105118 1fl0A 171 2.72e+01 1eujA b.40.4.4 25315 1muwA 386 2.76e+01 c.1.15.3 79495 1k6iA 352 2.86e+01 c.2.1.2 68223 1b63A 333 2.86e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1pa7A 130 2.97e+01 a.40.1.1 94410 1dszA 86 2.97e+01 2nllB g.39.1.2 45129 1oi0A 124 3.01e+01 c.97.3.1 93045 1f1eA 154 3.02e+01 a.22.1.2 64927 1i4uA 181 3.04e+01 b.60.1.1 61732 1rkiA 102 3.14e+01 1iw0A 215 3.24e+01 a.132.1.1 83720 1ow4A 129 3.27e+01 a.39.2.1 93628 1f74A 293 3.41e+01 1nal3 c.1.10.1 29079 1b3tA 147 3.46e+01 1b3tA d.58.8.1 39228 1b4pA 217 3.49e+01 a.45.1.1,c.47.1.5 83158,83159 1dowA 205 3.50e+01 1dovA a.24.9.1 16626 1e1hB 174 3.51e+01 1f1mA 164 3.54e+01 1ggqA a.24.12.1 59598 1p5zB 263 3.59e+01 c.37.1.1 87815 1akhA 61 3.60e+01 1akhA a.4.1.1 15980 1iwlA 182 3.64e+01 b.125.1.1 83757 1msk 331 3.66e+01 1msk d.173.1.1 42495 1nkd 65 3.68e+01 1nkd a.30.1.1 16974 1ek6A 348 3.78e+01 1xel c.2.1.2 29800 1s5aA 150 3.82e+01 d.17.4.10 98525 1bgf 124 3.85e+01 1bgf a.90.1.1 18537 1pvmA 184 3.88e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1k92A 455 3.88e+01 c.26.2.1,d.210.1.1 68325,68326 1a76 326 3.97e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1c1kA 217 4.10e+01 1c1kA a.120.1.1 19239 1pmi 440 4.11e+01 1pmi b.82.1.3 28114 1rc9A 221 4.11e+01 1lniA 96 4.11e+01 d.1.1.2 74046 1ag9A 175 4.12e+01 1rcf c.23.5.1 31178 1as4B 37 4.19e+01 1as4B 1sg4A 260 4.19e+01 1m6kA 251 4.25e+01 e.3.1.1 78695 1pjxA 314 4.46e+01 b.68.6.1 104167 1a6q 382 4.48e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1af7 274 4.53e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1mtyG 162 4.57e+01 1mtyG a.23.3.1 16498 1t9iA 163 4.62e+01 1p5dX 463 4.76e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1ne9A 335 4.81e+01 d.108.1.4,d.108.1.4 91839,91840 1nofA 383 4.84e+01 b.71.1.2,c.1.8.3 92020,92021 1jigA 146 5.07e+01 a.25.1.1 71685 1mxiA 160 5.43e+01 c.116.1.1 79646 1rliA 184 5.50e+01 c.23.5.6 97647 1bkrA 109 5.50e+01 1bkrA a.40.1.1 17394 1a32 88 5.56e+01 1a32 a.16.1.2 16384 1po5A 476 5.68e+01 a.104.1.1 94963 1k07A 263 5.96e+01 d.157.1.1 77218 1rfyA 102 6.22e+01 1jtvA 327 6.35e+01 c.2.1.2 84230 1ash 150 6.40e+01 1ash a.1.1.2 15622 1i12A 160 6.46e+01 1i21A d.108.1.1 61515 1q92A 197 6.50e+01 c.108.1.8 96250 1o9rA 162 6.50e+01 a.25.1.1 86706 1go3F 107 6.57e+01 a.60.8.2 65407 1tukA 67 6.59e+01 1moq 368 6.70e+01 1moq c.80.1.1 35302 1pv5A 264 6.83e+01 d.251.1.1 95150 1n97A 389 6.86e+01 a.104.1.1 80335 1jhgA 101 7.00e+01 1jhgA a.4.12.1 19009 1co6A 107 7.03e+01 1ycc a.3.1.1 15894 1jlvA 209 7.22e+01 a.45.1.1,c.47.1.5 71729,71730 1j24A 143 7.23e+01 c.52.1.20 84008 1u0fA 564 7.30e+01 1iooA 196 7.37e+01 d.124.1.1 71250 1p4cA 380 7.57e+01 c.1.4.1 94100 1qnrA 344 7.58e+01 1qnoA c.1.8.3 28834 1l9xA 315 7.64e+01 c.23.16.1 73762 1orc 71 7.64e+01 1orc a.35.1.2 17054 1tu7A 208 7.66e+01 1ty9A 222 7.84e+01 1eg2A 319 8.10e+01 1eg2A c.66.1.11 34249 1rz2A 254 8.12e+01 b.100.1.1 105130 1at0 145 8.24e+01 1at0 b.86.1.1 28374 1eokA 290 8.45e+01 1eokA c.1.8.5 28991 1h7cA 108 8.55e+01 a.7.5.1 70914 1tmxA 293 8.63e+01 1pe1A 267 8.81e+01 c.1.10.4 94591 1es9A 232 8.82e+01 1wab c.23.10.3 31340 1f60B 94 8.86e+01 1b64 d.58.12.1 39307 1n08A 163 8.96e+01 b.43.5.1 79730 1c3pA 375 8.96e+01 1c3pA c.42.1.2 32606 1d1qA 161 8.99e+01 1dg9A c.44.1.1 32642