# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b0b 142 6.32e-02 2fal a.1.1.2 15010 1iomA 377 1.46e-01 a.103.1.1 83698 1dk0A 188 1.23e+00 1b2vA d.35.1.1 38530 1e9gA 286 1.47e+00 1wgjA b.40.5.1 59393 1hh8A 213 1.85e+00 1e96B a.118.8.1 61042 1kgsA 225 2.20e+00 a.4.6.1,c.23.1.1 68596,68597 1k6iA 352 3.23e+00 c.2.1.2 68223 1l9lA 74 3.27e+00 a.64.1.1 77827 1josA 128 3.33e+00 d.52.7.1 84191 1g5aA 628 3.36e+00 b.71.1.1,c.1.8.1 65152,65153 1rrmA 386 3.62e+00 e.22.1.2 105081 1dlwA 116 3.84e+00 1dlyA a.1.1.1 14982 1n97A 389 4.49e+00 a.104.1.1 80335 1alvA 173 4.80e+00 1alvA a.39.1.8 17370 1ikpA 613 5.28e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1a8y 367 5.40e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2cfuA 658 5.69e+00 1mba 147 5.93e+00 2fal a.1.1.2 15149 1si6X 282 6.46e+00 1a6m 151 6.63e+00 1a6m a.1.1.2 15018 1b4pA 217 6.88e+00 a.45.1.1,c.47.1.5 83158,83159 1f74A 293 6.99e+00 1nal3 c.1.10.1 29079 1axn 323 7.08e+00 1avc a.65.1.1 18149 1s9rA 410 7.11e+00 d.126.1.4 98758 1dowA 205 7.44e+00 1dovA a.24.9.1 16626 1n08A 163 8.10e+00 b.43.5.1 79730 1nxuA 333 8.47e+00 c.122.1.1 86389 1psrA 100 8.51e+00 1psrA a.39.1.2 17180 1gk9A 260 9.53e+00 d.153.1.2 65246 1pbjA 125 9.83e+00 d.37.1.1,d.37.1.1 94414,94415 1qo7A 394 9.97e+00 1qo7A c.69.1.11 34697 1d3vA 323 1.01e+01 1d3vA c.42.1.1 32559 1p5dX 463 1.28e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1p5zB 263 1.29e+01 c.37.1.1 87815 2gnxA 365 1.32e+01 1rjdA 334 1.36e+01 c.66.1.37 97558 1k94A 165 1.45e+01 a.39.1.8 68333 1mw9X 592 1.55e+01 e.10.1.1 91480 1jigA 146 1.58e+01 a.25.1.1 71685 1lq9A 112 1.61e+01 d.58.4.3 78129 1it2A 146 1.67e+01 a.1.1.2 66365 1k3yA 221 1.69e+01 a.45.1.1,c.47.1.5 77245,77246 1on2A 142 1.78e+01 a.4.5.24,a.76.1.1 87103,87104 1ezwA 349 1.78e+01 1ezwA c.1.16.3 29558 1gz8A 299 1.79e+01 d.144.1.7 83405 1qnrA 344 1.82e+01 1qnoA c.1.8.3 28834 1e7wA 291 1.99e+01 c.2.1.2 59373 1i4uA 181 2.00e+01 b.60.1.1 61732 1tmxA 293 2.04e+01 1jboA 162 2.15e+01 a.1.1.3 84150 1go3F 107 2.26e+01 a.60.8.2 65407 1mtyG 162 2.28e+01 1mtyG a.23.3.1 16498 1orc 71 2.30e+01 1orc a.35.1.2 17054 1dc1A 323 2.32e+01 1dc1A c.52.1.11 33321 1eaqA 140 2.33e+01 b.2.5.6 76144 1ek6A 348 2.35e+01 1xel c.2.1.2 29800 1ars 396 2.36e+01 1ajsA c.67.1.1 34287 1rfyA 102 2.41e+01 1ow4A 129 2.47e+01 a.39.2.1 93628 1a32 88 2.53e+01 1a32 a.16.1.2 16384 1kqpA 271 2.58e+01 c.26.2.1 72883 1f7lA 121 2.59e+01 1f7lA d.150.1.2 59666 1moq 368 2.60e+01 1moq c.80.1.1 35302 1zoiA 276 2.81e+01 1h32A 261 2.84e+01 a.3.1.8,a.3.1.8 76618,76619 1as4B 37 2.88e+01 1as4B 1oxjA 173 3.03e+01 a.60.1.2,a.118.1.13 87517,87518 1hxiA 121 3.03e+01 1hxiA a.118.8.1 61366 1p4cA 380 3.15e+01 c.1.4.1 94100 1nkpA 88 3.15e+01 a.38.1.1 80573 1sauA 115 3.18e+01 1hw1A 239 3.28e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1nofA 383 3.33e+01 b.71.1.2,c.1.8.3 92020,92021 1lniA 96 3.50e+01 d.1.1.2 74046 1j6oA 268 3.51e+01 c.1.9.12 77088 1rcqA 357 3.57e+01 b.49.2.2,c.1.6.1 104882,104883 1oi0A 124 3.73e+01 c.97.3.1 93045 1b4fA 82 3.75e+01 1b4fA a.60.1.2 17934 1odzA 386 3.79e+01 c.1.8.3 86889 1adt 356 3.91e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1k3xA 262 4.07e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1nu4A 97 4.07e+01 d.58.7.1 80731 1b0xA 94 4.08e+01 1b4fA a.60.1.2 17933 16vpA 366 4.20e+01 16vpA d.180.1.1 42601 1hz4A 373 4.37e+01 a.118.8.2 65960 1e1hB 174 4.44e+01 1d2vC 466 4.52e+01 1mhlC 1r5lA 262 4.56e+01 a.5.3.1,c.13.1.1 97099,97100 1jtvA 327 4.59e+01 c.2.1.2 84230 1iqcA 308 4.73e+01 a.3.1.5,a.3.1.5 66266,66267 1nkd 65 4.91e+01 1nkd a.30.1.1 16974 1b56 135 4.97e+01 1hmt b.60.1.2 27183 1pwxA 254 5.33e+01 c.2.1.2 95262 1c3cA 429 5.34e+01 1c3cA a.127.1.1 19425 1co6A 107 5.42e+01 1ycc a.3.1.1 15894 1mla 309 5.54e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1oz2A 331 5.56e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1elkA 157 5.62e+01 1dvpA a.118.9.2 19217 1r1tA 122 5.66e+01 a.4.5.5 104769 1o9iA 266 5.80e+01 a.25.1.3 92671 1obdA 306 5.90e+01 d.143.1.1 86767 1q9uA 130 6.14e+01 d.129.7.1 96314 1jm1A 204 6.16e+01 b.33.1.1 71745 1b5fA 239 6.19e+01 1smrA b.50.1.2 26836 1iv3A 152 6.27e+01 d.79.5.1 76828 1es9A 232 6.57e+01 1wab c.23.10.3 31340 1rc9A 221 6.61e+01 1b3uA 588 6.62e+01 1b3uA a.118.1.2 19135 1d3gA 367 6.68e+01 1d3gA c.1.4.1 28600 1pa7A 130 6.79e+01 a.40.1.1 94410 1llfA 534 6.83e+01 c.69.1.17 78094 1avsA 90 7.03e+01 1cll a.39.1.5 17226 1hnjA 317 7.08e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1ornA 226 7.18e+01 a.96.1.1 87342 1orrA 347 7.39e+01 c.2.1.2 93460 1mtyB 384 7.74e+01 1mtyB a.25.1.2 16740 1jsdB 176 7.77e+01 h.3.1.1 63259 1oywA 523 7.85e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1ayx 492 7.88e+01 1ayx a.102.1.1 18825 1rp0A 284 8.03e+01 1fs7A 485 8.24e+01 1qdbA a.138.1.3 19691 1d0cA 444 8.26e+01 d.174.1.1 64769 1ajsA 412 8.37e+01 1ajsA c.67.1.1 34276 1agg 48 8.37e+01 1agg g.3.6.2 44102 1r7jA 95 8.42e+01 a.4.5.49 104836 1qh5A 260 8.63e+01 1qh5A d.157.1.2 42057 1p4oA 322 8.70e+01 d.144.1.7 87775 1jmkC 230 8.73e+01 c.69.1.22 71747 1jlvA 209 8.77e+01 a.45.1.1,c.47.1.5 71729,71730 1kzfA 230 8.87e+01 d.108.1.3 73354 1bx4A 345 8.91e+01 1bx4A c.72.1.1 34935