# List of top-scoring protein chains for t06-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b0b 142 2.60e-01 2fal a.1.1.2 15010 1e9gA 286 1.04e+00 1wgjA b.40.5.1 59393 1josA 128 1.23e+00 d.52.7.1 84191 1a8y 367 1.71e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1alvA 173 2.48e+00 1alvA a.39.1.8 17370 1f74A 293 2.81e+00 1nal3 c.1.10.1 29079 1dk0A 188 2.96e+00 1b2vA d.35.1.1 38530 1s9rA 410 3.03e+00 d.126.1.4 98758 1n08A 163 3.06e+00 b.43.5.1 79730 1kgsA 225 3.21e+00 a.4.6.1,c.23.1.1 68596,68597 1l9lA 74 3.24e+00 a.64.1.1 77827 1iomA 377 3.42e+00 a.103.1.1 83698 1on2A 142 5.46e+00 a.4.5.24,a.76.1.1 87103,87104 1a6m 151 5.72e+00 1a6m a.1.1.2 15018 1dlwA 116 6.33e+00 1dlyA a.1.1.1 14982 1rrmA 386 6.63e+00 e.22.1.2 105081 1hw1A 239 7.41e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1pbjA 125 8.05e+00 d.37.1.1,d.37.1.1 94414,94415 1oi0A 124 8.37e+00 c.97.3.1 93045 1g5aA 628 8.38e+00 b.71.1.1,c.1.8.1 65152,65153 1hh8A 213 8.80e+00 1e96B a.118.8.1 61042 2gnxA 365 9.16e+00 1mtyG 162 9.69e+00 1mtyG a.23.3.1 16498 1dc1A 323 1.10e+01 1dc1A c.52.1.11 33321 1k3yA 221 1.11e+01 a.45.1.1,c.47.1.5 77245,77246 1orc 71 1.11e+01 1orc a.35.1.2 17054 2cfuA 658 1.12e+01 1moq 368 1.15e+01 1moq c.80.1.1 35302 1nkd 65 1.18e+01 1nkd a.30.1.1 16974 1eaqA 140 1.23e+01 b.2.5.6 76144 1dowA 205 1.26e+01 1dovA a.24.9.1 16626 1fs7A 485 1.35e+01 1qdbA a.138.1.3 19691 1mla 309 1.35e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1k94A 165 1.46e+01 a.39.1.8 68333 1mba 147 1.49e+01 2fal a.1.1.2 15149 1rjdA 334 1.49e+01 c.66.1.37 97558 1rfyA 102 1.56e+01 16vpA 366 1.59e+01 16vpA d.180.1.1 42601 1nxuA 333 1.64e+01 c.122.1.1 86389 1f7lA 121 1.71e+01 1f7lA d.150.1.2 59666 1gs9A 165 1.73e+01 a.24.1.1 83313 1pwxA 254 1.74e+01 c.2.1.2 95262 1k6iA 352 1.77e+01 c.2.1.2 68223 1gk9A 260 1.85e+01 d.153.1.2 65246 1rp0A 284 1.85e+01 1psrA 100 1.88e+01 1psrA a.39.1.2 17180 2gkpA 167 1.89e+01 1axn 323 1.91e+01 1avc a.65.1.1 18149 1qnrA 344 1.96e+01 1qnoA c.1.8.3 28834 1r7jA 95 2.01e+01 a.4.5.49 104836 1qo7A 394 2.04e+01 1qo7A c.69.1.11 34697 1mw9X 592 2.07e+01 e.10.1.1 91480 1jtvA 327 2.20e+01 c.2.1.2 84230 1b4pA 217 2.25e+01 a.45.1.1,c.47.1.5 83158,83159 1tmxA 293 2.28e+01 1go3F 107 2.29e+01 a.60.8.2 65407 1ikpA 613 2.33e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1it2A 146 2.39e+01 a.1.1.2 66365 1zoiA 276 2.44e+01 1b56 135 2.49e+01 1hmt b.60.1.2 27183 1b4fA 82 2.54e+01 1b4fA a.60.1.2 17934 1nofA 383 2.78e+01 b.71.1.2,c.1.8.3 92020,92021 1pjxA 314 2.79e+01 b.68.6.1 104167 1p5zB 263 2.79e+01 c.37.1.1 87815 1hz4A 373 2.81e+01 a.118.8.2 65960 1hxiA 121 2.81e+01 1hxiA a.118.8.1 61366 1bkrA 109 2.81e+01 1bkrA a.40.1.1 17394 1n97A 389 2.82e+01 a.104.1.1 80335 1co6A 107 2.86e+01 1ycc a.3.1.1 15894 1kqpA 271 3.01e+01 c.26.2.1 72883 1sauA 115 3.20e+01 1i4uA 181 3.37e+01 b.60.1.1 61732 1a32 88 3.42e+01 1a32 a.16.1.2 16384 1j6oA 268 3.42e+01 c.1.9.12 77088 1sx7A 164 3.48e+01 1si6X 282 3.61e+01 1tt8A 164 3.79e+01 1d2vC 466 3.93e+01 1mhlC 1s2oA 244 3.96e+01 1p4cA 380 3.98e+01 c.1.4.1 94100 1nu4A 97 3.98e+01 d.58.7.1 80731 1ars 396 4.12e+01 1ajsA c.67.1.1 34287 1odzA 386 4.16e+01 c.1.8.3 86889 1akhA 61 4.18e+01 1akhA a.4.1.1 15980 1as4B 37 4.26e+01 1as4B 1b3uA 588 4.32e+01 1b3uA a.118.1.2 19135 1iqcA 308 4.32e+01 a.3.1.5,a.3.1.5 66266,66267 1a76 326 4.37e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1rcqA 357 4.46e+01 b.49.2.2,c.1.6.1 104882,104883 1b0xA 94 4.57e+01 1b4fA a.60.1.2 17933 1llfA 534 4.60e+01 c.69.1.17 78094 1sg4A 260 4.66e+01 1qb7A 236 4.70e+01 1qb7A c.61.1.1 34087 1oksA 56 4.72e+01 a.8.5.1 93271 1oz2A 331 4.76e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1avsA 90 4.81e+01 1cll a.39.1.5 17226 1r1tA 122 4.83e+01 a.4.5.5 104769 1jlvA 209 4.83e+01 a.45.1.1,c.47.1.5 71729,71730 1jigA 146 4.96e+01 a.25.1.1 71685 1n9eA 787 4.99e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1obdA 306 5.36e+01 d.143.1.1 86767 1e7wA 291 5.41e+01 c.2.1.2 59373 1ek6A 348 5.58e+01 1xel c.2.1.2 29800 1ornA 226 5.75e+01 a.96.1.1 87342 1r5lA 262 5.91e+01 a.5.3.1,c.13.1.1 97099,97100 1kyhA 276 5.96e+01 c.72.1.4 73222 1k3xA 262 6.03e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1k55A 246 6.05e+01 e.3.1.1 68156 1lq9A 112 6.06e+01 d.58.4.3 78129 1m1nA 491 6.40e+01 c.92.2.3 78417 1h7cA 108 6.60e+01 a.7.5.1 70914 1b2pA 119 6.71e+01 1b2pA b.78.1.1 27998 1qgvA 142 6.79e+01 1qgvA c.47.1.8 33056 1r4pA 297 6.80e+01 d.165.1.2 97025 1gz8A 299 6.98e+01 d.144.1.7 83405 1h32A 261 7.08e+01 a.3.1.8,a.3.1.8 76618,76619 1bx4A 345 7.29e+01 1bx4A c.72.1.1 34935 1eca 136 7.46e+01 1flp a.1.1.2 15209 1ajsA 412 7.61e+01 1ajsA c.67.1.1 34276 1ayx 492 7.61e+01 1ayx a.102.1.1 18825 1o7nA 449 7.68e+01 b.33.1.2,d.129.3.3 81162,81163 1aocA 175 7.70e+01 1aocA g.17.1.5 44817 1hdhA 536 7.71e+01 c.76.1.2 65805 1k07A 263 7.82e+01 d.157.1.1 77218 1nkpA 88 7.84e+01 a.38.1.1 80573 1mtyB 384 7.87e+01 1mtyB a.25.1.2 16740 1mxrA 375 7.88e+01 a.25.1.2 85197 1apyA 162 7.89e+01 1apyA d.153.1.5 42004 1oxjA 173 7.94e+01 a.60.1.2,a.118.1.13 87517,87518 1p4oA 322 7.96e+01 d.144.1.7 87775 1fn9A 365 8.00e+01 1fn9A d.196.1.1 59894 1hnjA 317 8.11e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1sc3A 178 8.18e+01 c.17.1.1 105416 1r5rA 119 8.24e+01 a.39.2.1 97104 1qf8A 182 8.36e+01 1qf8A g.41.4.1 45212 1rz2A 254 8.40e+01 b.100.1.1 105130 1d0cA 444 8.43e+01 d.174.1.1 64769 1a0p 290 8.44e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1jmkC 230 8.46e+01 c.69.1.22 71747 1oaa 259 8.62e+01 1oaa c.2.1.2 29829 1gca 309 8.73e+01 1gca c.93.1.1 35659 1lk9A 448 8.80e+01 c.67.1.1 78057