# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b0b 142 1.10e+00 2fal a.1.1.2 15010 1tmxA 293 1.31e+00 1r29A 127 1.78e+00 d.42.1.1 96856 1a32 88 3.27e+00 1a32 a.16.1.2 16384 1pbjA 125 5.56e+00 d.37.1.1,d.37.1.1 94414,94415 1josA 128 6.91e+00 d.52.7.1 84191 1jyhA 157 7.44e+00 d.60.1.3 71956 2gnxA 365 7.60e+00 1jtvA 327 7.98e+00 c.2.1.2 84230 1mg4A 113 8.46e+00 d.15.11.1 84953 1kgsA 225 8.46e+00 a.4.6.1,c.23.1.1 68596,68597 1lq9A 112 8.95e+00 d.58.4.3 78129 1psrA 100 9.55e+00 1psrA a.39.1.2 17180 1mba 147 9.74e+00 2fal a.1.1.2 15149 1rkuA 206 9.95e+00 c.108.1.11 97627 1l9lA 74 1.10e+01 a.64.1.1 77827 1e1hB 174 1.11e+01 1nwwA 149 1.24e+01 d.17.4.8 86306 1rfyA 102 1.37e+01 1gz8A 299 1.43e+01 d.144.1.7 83405 1a6q 382 1.59e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1fl0A 171 1.73e+01 1eujA b.40.4.4 25315 1mxiA 160 1.81e+01 c.116.1.1 79646 1a8y 367 1.87e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1i71A 83 2.09e+01 5hpgA g.14.1.1 61864 1qb7A 236 2.27e+01 1qb7A c.61.1.1 34087 1jpzA 473 2.37e+01 a.104.1.1 67069 1akhA 61 2.65e+01 1akhA a.4.1.1 15980 1pvmA 184 3.07e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2f42A 179 3.10e+01 1pmi 440 3.13e+01 1pmi b.82.1.3 28114 1ne9A 335 3.22e+01 d.108.1.4,d.108.1.4 91839,91840 1b3tA 147 3.25e+01 1b3tA d.58.8.1 39228 1hw1A 239 3.30e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1s5aA 150 3.30e+01 d.17.4.10 98525 1o9rA 162 3.50e+01 a.25.1.1 86706 1owlA 484 3.50e+01 a.99.1.1,c.28.1.1 93647,93648 1i12A 160 3.53e+01 1i21A d.108.1.1 61515 1mtyG 162 3.60e+01 1mtyG a.23.3.1 16498 1oi0A 124 3.62e+01 c.97.3.1 93045 1dk0A 188 3.72e+01 1b2vA d.35.1.1 38530 1aym1 285 3.85e+01 1aym1 1q2hA 69 3.89e+01 a.34.4.1 104498 1eazA 125 3.92e+01 b.55.1.1 70113 1rcqA 357 4.31e+01 b.49.2.2,c.1.6.1 104882,104883 1e1hA 287 4.31e+01 d.92.1.7 83167 1h6hA 143 4.32e+01 d.189.1.1 65681 1e9gA 286 4.39e+01 1wgjA b.40.5.1 59393 1ag6 99 4.43e+01 1plc b.6.1.1 22857 1jigA 146 4.49e+01 a.25.1.1 71685 1h75A 81 4.71e+01 1h75A c.47.1.1 60716 1c3pA 375 4.94e+01 1c3pA c.42.1.2 32606 1a41 234 5.04e+01 1a41 d.163.1.2 42174 1jatB 138 5.50e+01 1jatB d.20.1.1 62819 1md6A 154 5.55e+01 b.42.1.2 91242 1m6kA 251 5.70e+01 e.3.1.1 78695 1ow4A 129 5.84e+01 a.39.2.1 93628 1a6m 151 6.00e+01 1a6m a.1.1.2 15018 1rkiA 102 6.08e+01 1kq6A 141 6.12e+01 d.189.1.1 91020 1alvA 173 6.16e+01 1alvA a.39.1.8 17370 1cqmA 101 6.21e+01 1ris d.58.14.1 39321 1k6iA 352 6.26e+01 c.2.1.2 68223 1h7cA 108 6.31e+01 a.7.5.1 70914 1b63A 333 6.34e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1ogiA 303 6.40e+01 b.43.4.2,c.25.1.1 92914,92915 1s9rA 410 6.56e+01 d.126.1.4 98758 1q7lB 88 6.98e+01 1qtnA 164 7.02e+01 1pauA c.17.1.1 30999 1ihjA 98 7.03e+01 1pdr b.36.1.1 62382 1ty9A 222 7.10e+01 1dc1A 323 7.30e+01 1dc1A c.52.1.11 33321 1ad2 228 7.46e+01 1ad2 e.24.1.1 43353 1msk 331 7.49e+01 1msk d.173.1.1 42495 1dcs 311 7.69e+01 1dcs b.82.2.1 28124 1mml 265 7.90e+01 1mml e.8.1.2 43015 1ls9A 91 8.04e+01 a.3.1.1 78177 1k92A 455 8.04e+01 c.26.2.1,d.210.1.1 68325,68326 1d0dA 60 8.12e+01 1kigI g.8.1.2 44566 1dusA 194 8.31e+01 1dusA c.66.1.4 34182 1ag9A 175 8.37e+01 1rcf c.23.5.1 31178 1s29A 92 8.40e+01 a.4.5.46 98373 1ifc 132 8.46e+01 b.60.1.2 27173 2gkpA 167 8.49e+01 1jo8A 58 8.52e+01 b.34.2.1 71774 1dszA 86 8.52e+01 2nllB g.39.1.2 45129 1r0uA 148 8.55e+01 b.60.1.5 96741 1tn6B 437 8.59e+01 1oksA 56 8.61e+01 a.8.5.1 93271 1nkpA 88 8.63e+01 a.38.1.1 80573 1rxqA 178 8.69e+01 a.213.1.1 105118 1q8dA 108 8.76e+01 a.228.1.1 104554 1idpA 172 8.94e+01 d.17.4.1 83685