# List of top-scoring protein chains for T0287.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hq0A 295 5.08e-01 1hzgA d.194.1.1 61122 1hzgA 295 6.15e-01 1hzgA d.194.1.1 61436 2ahrA 259 7.82e+00 1wm5A 208 9.22e+00 1e96B 203 9.50e+00 1e96B a.118.8.1 19211 1hh8A 213 1.05e+01 1e96B a.118.8.1 61042 1iomA 377 1.11e+01 a.103.1.1 83698 1wcv1 257 1.42e+01 2bekA 257 1.57e+01 1qzgA 187 1.62e+01 b.40.4.3 96643 1ifvA 155 1.74e+01 d.129.3.1 71204 1g24A 211 1.87e+01 1g24A d.166.1.1 42270 1gzeA 211 1.89e+01 d.166.1.1 76414 2a9kB 223 1.90e+01 2cunA 410 2.02e+01 2bovB 251 2.07e+01 5reqA 727 2.43e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 1reqA 727 2.43e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1e1cA 727 2.44e+01 1reqA c.1.19.1,c.23.6.1 29636,31263 1dh3A 55 2.45e+01 1a02J h.1.3.1 45546 1tia 279 2.68e+01 3tgl c.69.1.17 34737 1uijA 416 2.83e+01 b.82.1.2,b.82.1.2 107866,107867 1ipjA 416 2.91e+01 b.82.1.2,b.82.1.2 71258,71259 1ipkA 416 2.93e+01 b.82.1.2,b.82.1.2 71264,71265 1ry8A 323 3.16e+01 1kobA 387 3.19e+01 1tkiA d.144.1.7 41640 1s1pA 331 3.22e+01 c.1.7.1 98350 1q23A 219 3.37e+01 c.43.1.1 104481 2sas 185 3.75e+01 2sas a.39.1.5 17258 1klxA 138 3.88e+01 a.118.18.1 77440 1npc 317 4.19e+01 1hyt d.92.1.2 59012 1iwdA 215 4.21e+01 d.3.1.1 83756 1esp 317 4.23e+01 1hyt d.92.1.2 58979 1vlcA 366 4.24e+01 c.77.1.1 108743 1icxA 155 4.28e+01 d.129.3.1 71191 1wthD 391 4.59e+01 1pieA 419 4.70e+01 d.14.1.5,d.58.26.7 94706,94707 1ugrA 203 4.74e+01 d.149.1.1 107835 1ugpA 203 4.81e+01 d.149.1.1 107831 1pbjA 125 4.83e+01 d.37.1.1,d.37.1.1 94414,94415 1ireA 204 4.84e+01 d.149.1.1 76769 3ladA 476 4.84e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1xssA 225 4.99e+01 1ytaA 180 5.41e+01 1h8mA 140 5.50e+01 1h8mA d.110.4.1 60782 1u8sA 192 5.62e+01 d.58.18.5,d.58.18.5 107737,107738 1ml9A 302 5.81e+01 b.85.7.1 79282 2ffcA 353 5.83e+01 1ii8A 195 5.84e+01 1f2tA c.37.1.12 62417 1f74A 293 5.86e+01 1nal3 c.1.10.1 29079 2bcoA 350 6.48e+01 1pzxA 289 6.65e+01 c.119.1.1 95484 1aj4 161 6.67e+01 1ncx a.39.1.5 17244 1jk0B 345 6.75e+01 a.25.1.2 63143 1vmbA 140 6.88e+01 1prgA 270 7.07e+01 2prgA a.123.1.1 19314 1fxwF 229 7.14e+01 c.23.10.3 65058 2f4bA 271 7.15e+01 1zgyA 272 7.17e+01 1knuA 274 7.19e+01 a.123.1.1 77457 1nyxA 276 7.22e+01 a.123.1.1 86431 3prgA 278 7.24e+01 2prgA a.123.1.1 19318 1rdtD 284 7.25e+01 1zeoA 277 7.26e+01 1k74D 283 7.27e+01 a.123.1.1 68252 1wm0X 292 7.28e+01 a.123.1.1 109404 1qxpA 900 7.38e+01 a.39.1.8,a.39.1.8,b.14.1.1,d.3.1.3 96543,96544,96545,96546 1t06A 235 7.40e+01 a.118.1.17 106194 1i7iA 292 7.44e+01 a.123.1.1 71125 2ayuA 417 7.45e+01 1x79A 98 7.47e+01 1pjxA 314 7.50e+01 b.68.6.1 104167 1s4vA 229 7.76e+01 d.3.1.1 98511 1qvbA 481 8.16e+01 1qvbA c.1.8.4 28983 1wyyA 149 8.49e+01 1r29A 127 8.52e+01 d.42.1.1 96856 1uikA 418 8.92e+01 b.82.1.2,b.82.1.2 107878,107879 1xg7A 250 8.96e+01