# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1klxA 138 2.10e+00 a.118.18.1 77440 2sas 185 3.52e+00 2sas a.39.1.5 17258 1g8pA 350 3.93e+00 1g8pA c.37.1.20 60376 1b0b 142 4.90e+00 2fal a.1.1.2 15010 1cpt 412 5.18e+00 1cpt a.104.1.1 18968 1josA 128 9.99e+00 d.52.7.1 84191 1qr6A 584 1.00e+01 1qr6A c.2.1.7,c.58.1.3 30293,33941 1ytzT 107 1.03e+01 1okcA 297 1.04e+01 f.42.1.1 93248 1g24A 211 1.17e+01 1g24A d.166.1.1 42270 1hh8A 213 1.23e+01 1e96B a.118.8.1 61042 1wm5A 208 1.25e+01 2d7vA 162 1.27e+01 2a9kB 223 1.27e+01 2bduA 297 1.30e+01 1z3xA 238 1.31e+01 1io1A 398 1.63e+01 1io1A e.32.1.1 62611 1rsy 152 1.87e+01 1rsy b.7.1.2 23192 1c02A 166 1.88e+01 1qspA a.24.10.2 16633 1fzcA 87 2.06e+01 1fzcA h.1.8.1 45590 2cwyA 94 2.06e+01 1efyA 350 2.15e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1knqA 175 2.17e+01 c.37.1.17 72786 1tia 279 2.17e+01 3tgl c.69.1.17 34737 2cunA 410 2.18e+01 1or7A 194 2.20e+01 a.4.13.2,a.177.1.1 87332,87333 1xvhA 129 2.23e+01 1wpuA 147 2.26e+01 1yviA 149 2.27e+01 1e9gA 286 2.33e+01 1wgjA b.40.5.1 59393 1tmxA 293 2.35e+01 2b7eA 59 2.36e+01 1rx0A 393 2.54e+01 a.29.3.1,e.6.1.1 98007,98008 1z9fA 153 2.55e+01 1k47A 337 2.60e+01 d.14.1.5,d.58.26.4 72040,72041 1wmqA 147 2.66e+01 2trcP 217 2.75e+01 1b9yC c.47.1.6 33051 1q3eA 207 2.82e+01 b.82.3.2 95669 1gpjA 404 2.98e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1utuA 108 3.00e+01 1hq0A 295 3.03e+01 1hzgA d.194.1.1 61122 1mrzA 293 3.07e+01 b.43.5.1,c.26.1.3 91452,91453 1w27A 714 3.23e+01 1wa5B 530 3.39e+01 1ytaA 180 3.48e+01 2g09A 297 3.50e+01 1i1rB 181 3.51e+01 1i1rB a.26.1.1 61548 1z2iA 358 3.65e+01 1k0dA 260 3.70e+01 a.45.1.1,c.47.1.5 67930,67931 1xssA 225 3.80e+01 1r6uA 437 3.84e+01 c.26.1.1 97163 1a8y 367 3.85e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1qbjA 81 3.86e+01 1qbjA a.4.5.19 16155 2d2sA 235 3.88e+01 1u6zA 513 3.95e+01 1dk0A 188 3.99e+01 1b2vA d.35.1.1 38530 1veaA 148 4.09e+01 d.275.1.1 108529 1xq8A 140 4.14e+01 1foeA 377 4.19e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1avmA 201 4.21e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1s7zA 117 4.28e+01 a.159.3.1 98715 1f3aA 222 4.50e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 2dddA 225 4.61e+01 1ur3M 319 4.65e+01 c.1.7.1 99806 1alvA 173 4.67e+01 1alvA a.39.1.8 17370 1ewqA 765 4.95e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1mlg 154 5.07e+01 1a6m a.1.1.2 15104 1fjgI 128 5.10e+01 1fjfI d.14.1.1 37559 1mod 154 5.13e+01 1a6m a.1.1.2 15107 1t6uA 117 5.13e+01 a.24.22.1 106584 1b4pA 217 5.14e+01 a.45.1.1,c.47.1.5 83158,83159 2a11A 242 5.22e+01 1iomA 377 5.35e+01 a.103.1.1 83698 1eg3A 261 5.37e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2ezvA 269 5.41e+01 1y1xA 191 5.47e+01 1sglA 209 5.52e+01 d.124.1.1 105536 1hw1A 239 5.61e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1mll 154 5.67e+01 1a6m a.1.1.2 15057 1h3lA 87 5.72e+01 a.177.1.1 76639 1ymmA 191 5.78e+01 1bzpA 153 5.79e+01 1a6m a.1.1.2 15020 1mym 154 5.79e+01 1a6m a.1.1.2 15054 1n08A 163 5.85e+01 b.43.5.1 79730 1s35A 214 5.89e+01 a.7.1.1,a.7.1.1 98420,98421 1guxA 218 5.92e+01 1guxA a.74.1.3 18388 1a6m 151 5.95e+01 1a6m a.1.1.2 15018 2fdsA 352 6.02e+01 1qi7A 253 6.03e+01 1qi7A d.165.1.1 42210 1zm0A 114 6.08e+01 1l9lA 74 6.12e+01 a.64.1.1 77827 1feuA 206 6.15e+01 1feuA b.53.1.1 59801 1yi8A 351 6.23e+01 1huw 166 6.25e+01 1huw a.26.1.1 16831 1mla 309 6.26e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1x1iA 752 6.29e+01 2spl 154 6.33e+01 1a6m a.1.1.2 15047 2mgb 154 6.34e+01 1a6m a.1.1.2 15102 1bsmA 201 6.34e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 2c6qA 351 6.51e+01 1fo4A 1332 6.52e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 17910,37695,38586,40227,41416,41758 1wwzA 159 6.56e+01 2bb6A 414 6.59e+01 103m 154 6.66e+01 1a6m a.1.1.2 15124 1j09A 468 6.71e+01 a.97.1.1,c.26.1.1 77025,77026 1dc1A 323 6.74e+01 1dc1A c.52.1.11 33321 1w4vA 119 6.90e+01 1htyA 1015 6.92e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1fs7A 485 7.04e+01 1qdbA a.138.1.3 19691 2mgg 154 7.10e+01 1a6m a.1.1.2 15069 1upkA 341 7.17e+01 a.118.1.15 99758 1tljA 213 7.24e+01 d.282.1.1 107126 1wkoA 180 7.34e+01 1fkmA 396 7.35e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1uvzA 119 7.50e+01 2br9A 234 7.63e+01 1uurA 473 7.69e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 2gnxA 365 7.72e+01 1zmtA 254 7.72e+01 1zhhB 242 7.74e+01 1vpkA 378 7.85e+01 1na6A 404 8.02e+01 b.142.1.1,c.52.1.22 91748,91749 1dlwA 116 8.13e+01 1dlyA a.1.1.1 14982 1jboA 162 8.21e+01 a.1.1.3 84150 2ezk 99 8.26e+01 2ezk a.4.1.2 16027 1qwnA 1045 8.30e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1lj2A 110 8.33e+01 h.1.13.2 73926 1jfzA 154 8.46e+01 a.149.1.1 66655 1qtrA 317 8.70e+01 1qtrA c.69.1.7 34660 1dowA 205 8.78e+01 1dovA a.24.9.1 16626 1k78A 149 8.88e+01 a.4.1.5,a.4.1.5 68255,68256 1bf5A 545 9.00e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526