# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cunA 410 1.87e-01 1cpt 412 3.30e-01 1cpt a.104.1.1 18968 1klxA 138 1.53e+00 a.118.18.1 77440 2sas 185 1.66e+00 2sas a.39.1.5 17258 1b0b 142 2.48e+00 2fal a.1.1.2 15010 1josA 128 2.94e+00 d.52.7.1 84191 1yviA 149 4.30e+00 1i1rB 181 4.76e+00 1i1rB a.26.1.1 61548 1qr6A 584 4.91e+00 1qr6A c.2.1.7,c.58.1.3 30293,33941 1ytzT 107 5.92e+00 1y1xA 191 6.19e+00 1knqA 175 6.70e+00 c.37.1.17 72786 1efyA 350 6.80e+00 1a26 a.41.1.1,d.166.1.2 17413,42275 2a9kB 223 7.11e+00 1g24A 211 7.18e+00 1g24A d.166.1.1 42270 1sglA 209 7.69e+00 d.124.1.1 105536 1z3xA 238 8.27e+00 2d7vA 162 8.37e+00 2cy7A 396 9.05e+00 1fzcA 87 9.33e+00 1fzcA h.1.8.1 45590 2cwyA 94 9.50e+00 1e9gA 286 9.72e+00 1wgjA b.40.5.1 59393 1g8pA 350 9.85e+00 1g8pA c.37.1.20 60376 1io1A 398 1.04e+01 1io1A e.32.1.1 62611 1fkmA 396 1.04e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1eg3A 261 1.05e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2bduA 297 1.16e+01 1iomA 377 1.21e+01 a.103.1.1 83698 1yi8A 351 1.24e+01 2mgg 154 1.26e+01 1a6m a.1.1.2 15069 1qbjA 81 1.28e+01 1qbjA a.4.5.19 16155 1xvhA 129 1.31e+01 1ee4A 423 1.36e+01 1ee4A a.118.1.1 19128 1z9fA 153 1.48e+01 2b7eA 59 1.55e+01 1quqB 121 1.62e+01 1quqB b.40.4.3 25305 1r6uA 437 1.63e+01 c.26.1.1 97163 1mll 154 1.72e+01 1a6m a.1.1.2 15057 1bkdS 439 1.72e+01 1bkdS a.117.1.1 19111 1p36A 164 1.72e+01 d.2.1.3 93978 1mod 154 1.73e+01 1a6m a.1.1.2 15107 1k0dA 260 1.80e+01 a.45.1.1,c.47.1.5 67930,67931 1alvA 173 1.81e+01 1alvA a.39.1.8 17370 1ab4 477 1.83e+01 1ab4 e.11.1.1 43251 2spl 154 1.85e+01 1a6m a.1.1.2 15047 1b4pA 217 1.87e+01 a.45.1.1,c.47.1.5 83158,83159 119l 164 1.87e+01 1l92 d.2.1.3 36622 1sz9A 144 1.88e+01 a.118.9.4 106139 1t6uA 117 1.90e+01 a.24.22.1 106584 1bzpA 153 1.92e+01 1a6m a.1.1.2 15020 1guxA 218 2.03e+01 1guxA a.74.1.3 18388 1wa5B 530 2.10e+01 1dlwA 116 2.11e+01 1dlyA a.1.1.1 14982 1mym 154 2.13e+01 1a6m a.1.1.2 15054 1vcsA 102 2.15e+01 1mlo 154 2.24e+01 1a6m a.1.1.2 15085 1zm0A 114 2.24e+01 1hh8A 213 2.25e+01 1e96B a.118.8.1 61042 3lynA 136 2.27e+01 1lis a.19.1.1 16413 2b8wA 328 2.28e+01 1wm5A 208 2.29e+01 1c02A 166 2.30e+01 1qspA a.24.10.2 16633 1w33A 181 2.30e+01 103m 154 2.36e+01 1a6m a.1.1.2 15124 1mrzA 293 2.38e+01 b.43.5.1,c.26.1.3 91452,91453 2mgb 154 2.39e+01 1a6m a.1.1.2 15102 1a6m 151 2.46e+01 1a6m a.1.1.2 15018 1mlg 154 2.53e+01 1a6m a.1.1.2 15104 1k47A 337 2.55e+01 d.14.1.5,d.58.26.4 72040,72041 1htyA 1015 2.63e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1or7A 194 2.74e+01 a.4.13.2,a.177.1.1 87332,87333 2gh1A 301 2.76e+01 1lw9A 164 2.79e+01 d.2.1.3 84727 1w4vA 119 2.82e+01 5csmA 256 2.83e+01 5csmA a.130.1.2 19494 2al1A 436 2.85e+01 1uvzA 119 2.89e+01 1q6hA 224 2.92e+01 d.26.1.1 95975 1hq0A 295 2.92e+01 1hzgA d.194.1.1 61122 1xq8A 140 2.93e+01 1rsy 152 2.97e+01 1rsy b.7.1.2 23192 1fjgI 128 3.01e+01 1fjfI d.14.1.1 37559 1q6uA 245 3.18e+01 d.26.1.1 95998 1rjdA 334 3.20e+01 c.66.1.37 97558 2al2A 436 3.21e+01 1oneA 436 3.23e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1gpjA 404 3.29e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1sumB 235 3.31e+01 a.7.12.1 106025 1utuA 108 3.35e+01 1mla 309 3.36e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1dowA 205 3.51e+01 1dovA a.24.9.1 16626 1qwnA 1045 3.54e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2c4jA 218 3.56e+01 1dc1A 323 3.57e+01 1dc1A c.52.1.11 33321 1xfiA 367 3.58e+01 e.50.1.1 109584 2c5uA 375 3.60e+01 1z2iA 358 3.62e+01 1q3eA 207 3.64e+01 b.82.3.2 95669 1feuA 206 3.73e+01 1feuA b.53.1.1 59801 1r71A 178 3.75e+01 a.4.14.1 104823 1icrA 217 3.79e+01 1vfrA d.90.1.1 62274 1s9rA 410 3.80e+01 d.126.1.4 98758 1ykiA 217 3.84e+01 1pbv 195 3.91e+01 1pbv a.118.3.1 19179 4enl 436 3.94e+01 4enl c.1.11.1,d.54.1.1 29202,38846 2br9A 234 3.97e+01 1qi7A 253 3.97e+01 1qi7A d.165.1.1 42210 1k8kD 300 4.03e+01 d.198.2.1,d.198.2.1 68309,68310 1rx0A 393 4.04e+01 a.29.3.1,e.6.1.1 98007,98008 1okcA 297 4.05e+01 f.42.1.1 93248 1xx0A 127 4.08e+01 1xw5A 217 4.09e+01 1r8mE 203 4.09e+01 a.118.3.1 97242 1r8sE 203 4.12e+01 a.118.3.1 97248 1bsmA 201 4.16e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1u6zA 513 4.24e+01 1a32 88 4.29e+01 1a32 a.16.1.2 16384 1s35A 214 4.37e+01 a.7.1.1,a.7.1.1 98420,98421 1k78A 149 4.39e+01 a.4.1.5,a.4.1.5 68255,68256 2bivA 243 4.43e+01 1ymmA 191 4.44e+01 1uedA 406 4.48e+01 a.104.1.1 99256 1mv8A 436 4.52e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1wn0A 145 4.57e+01 2trcP 217 4.62e+01 1b9yC c.47.1.6 33051 1ytaA 180 4.64e+01 1f3aA 222 4.70e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 2cfuA 658 4.75e+01 2ezk 99 4.80e+01 2ezk a.4.1.2 16027 1b4fA 82 4.85e+01 1b4fA a.60.1.2 17934 1i5pA 633 4.85e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1cc1L 498 4.89e+01 1h2rL e.18.1.1 43301 1ewqA 765 4.92e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1zx4A 192 4.94e+01 1koqA 253 4.94e+01 2cba b.74.1.1 27964 2g09A 297 4.95e+01 2c6qA 351 4.99e+01 2fymA 431 5.02e+01 1p68A 102 5.05e+01 k.8.1.1 94158 1oi1A 221 5.12e+01 b.34.9.3,b.34.9.3 87037,87038 1l9lA 74 5.19e+01 a.64.1.1 77827 2a11A 242 5.19e+01 1w6kA 732 5.23e+01 1cl1A 395 5.30e+01 1cl2A c.67.1.3 34395 1lj2A 110 5.42e+01 h.1.13.2 73926 2hddA 61 5.43e+01 2hddA a.4.1.1 15971 1rtxA 123 5.43e+01 a.1.1.1 97827 1y9qA 192 5.48e+01 1f4qA 165 5.54e+01 1alvA a.39.1.8 17360 1tu9A 134 5.54e+01 a.1.1.2 107320 1x05A 129 5.54e+01 1veaA 148 5.57e+01 d.275.1.1 108529 1n08A 163 5.58e+01 b.43.5.1 79730 1on2A 142 5.74e+01 a.4.5.24,a.76.1.1 87103,87104 1fs7A 485 5.77e+01 1qdbA a.138.1.3 19691 1yisA 478 5.91e+01 1h3lA 87 5.93e+01 a.177.1.1 76639 1z3iX 644 5.93e+01 1e7wA 291 5.95e+01 c.2.1.2 59373 1binB 143 5.97e+01 2gdm a.1.1.2 15232 2d2sA 235 5.98e+01 1s69A 124 6.03e+01 a.1.1.1 105305 1p2hA 571 6.03e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1vfgA 390 6.05e+01 a.173.1.1,d.218.1.4 108570,108571 1e39A 571 6.10e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1ixmA 192 6.14e+01 1ixmA d.123.1.1 41114 1f6dA 376 6.23e+01 1f6dA c.87.1.3 35467 2fm9A 215 6.25e+01 1o5zA 442 6.27e+01 c.59.1.2,c.72.2.2 92530,92531 1f0jA 377 6.33e+01 1f0jA a.211.1.2 19346 1hw1A 239 6.44e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1mba 147 6.46e+01 2fal a.1.1.2 15149 1k9uA 78 6.48e+01 a.39.1.10 84348 1xqsA 280 6.63e+01 1f52A 468 6.67e+01 1lgr d.15.9.1,d.128.1.1 37839,41169 1hxiA 121 6.68e+01 1hxiA a.118.8.1 61366 1it2A 146 6.72e+01 a.1.1.2 66365 1wdcC 156 6.76e+01 1wdcC a.39.1.5 17317 1tmxA 293 6.87e+01 1j09A 468 6.87e+01 a.97.1.1,c.26.1.1 77025,77026 1thfD 253 6.94e+01 1thfD c.1.2.1 28535 1yloA 348 6.95e+01 2occH 85 7.00e+01 2occH a.51.1.1 17796 1wpbA 172 7.02e+01 1k94A 165 7.03e+01 a.39.1.8 68333 1qwlA 505 7.04e+01 e.5.1.1 96483 1xjeA 644 7.04e+01 1avmA 201 7.04e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1f83A 425 7.07e+01 1f82A d.92.1.7 40306 1ghqB 134 7.10e+01 1ghqB g.18.1.1,g.18.1.1 60522,60523 1ois 223 7.11e+01 1a36A e.15.1.1 43267 1ly2A 130 7.16e+01 g.18.1.1,g.18.1.1 74335,74336 1zeeA 403 7.20e+01 1xszA 356 7.25e+01 1dk0A 188 7.27e+01 1b2vA d.35.1.1 38530 1q9iA 571 7.28e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1y0pA 571 7.28e+01 1vkeA 133 7.31e+01 a.152.1.2 108650 1vh7A 265 7.33e+01 c.1.2.1 100646 1kssA 571 7.35e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2bb6A 414 7.36e+01 1nvvS 481 7.37e+01 a.117.1.1 86279 1vliA 385 7.46e+01 b.85.1.1,c.1.10.6 108830,108831 1xgkA 352 7.56e+01 2b05A 246 7.65e+01 1jae 471 7.67e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1np8A 159 7.68e+01 a.39.1.8 92022 1u7lA 392 7.83e+01 1wpuA 147 7.84e+01 2csbA 519 7.84e+01 1wmqA 147 7.89e+01 1wwzA 159 7.90e+01 1r1tA 122 7.96e+01 a.4.5.5 104769 1x6iA 91 7.96e+01 2bw3A 534 7.99e+01 4crxA 322 8.03e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1zhhB 242 8.08e+01 1is2A 661 8.14e+01 a.29.3.2,a.29.3.2,e.6.1.2 71382,71383,71384 1r1qA 100 8.21e+01 d.93.1.1 104763 1lswA 131 8.25e+01 d.110.3.2 78181 1ift 263 8.27e+01 1mrj d.165.1.1 42211 1jfzA 154 8.36e+01 a.149.1.1 66655 1vqwA 457 8.39e+01 1upkA 341 8.47e+01 a.118.1.15 99758 1bf5A 545 8.62e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1jgsA 138 8.64e+01 a.4.5.28 66683 2cujA 108 8.68e+01 1nt4A 391 8.74e+01 c.60.1.2 92102 1tia 279 8.85e+01 3tgl c.69.1.17 34737 1bo1A 416 8.90e+01 1bo1A d.143.1.2 41591 1rxxA 421 8.93e+01 d.126.1.4 98061