# List of top-scoring protein chains for t04-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b0b 142 6.82e-01 2fal a.1.1.2 15010 1okcA 297 1.29e+00 f.42.1.1 93248 1iomA 377 1.48e+00 a.103.1.1 83698 1klxA 138 3.27e+00 a.118.18.1 77440 1rx0A 393 4.17e+00 a.29.3.1,e.6.1.1 98007,98008 1g24A 211 4.45e+00 1g24A d.166.1.1 42270 2a9kB 223 4.62e+00 1k47A 337 5.93e+00 d.14.1.5,d.58.26.4 72040,72041 2sas 185 6.87e+00 2sas a.39.1.5 17258 1sglA 209 9.05e+00 d.124.1.1 105536 2cunA 410 9.06e+00 1z2iA 358 9.22e+00 1yviA 149 9.33e+00 1cpt 412 9.79e+00 1cpt a.104.1.1 18968 1qbjA 81 1.03e+01 1qbjA a.4.5.19 16155 1sz9A 144 1.07e+01 a.118.9.4 106139 1dk0A 188 1.07e+01 1b2vA d.35.1.1 38530 2c6qA 351 1.17e+01 1ytzT 107 1.22e+01 1e9gA 286 1.28e+01 1wgjA b.40.5.1 59393 2bznA 351 1.41e+01 1knqA 175 1.43e+01 c.37.1.17 72786 1gpjA 404 1.44e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1pa2A 306 1.47e+01 1bgp a.93.1.1 18693 1fjgI 128 1.49e+01 1fjfI d.14.1.1 37559 1y1xA 191 1.54e+01 1fzcA 87 1.54e+01 1fzcA h.1.8.1 45590 1xvhA 129 1.57e+01 1hh8A 213 1.58e+01 1e96B a.118.8.1 61042 1wm5A 208 1.62e+01 1c02A 166 1.80e+01 1qspA a.24.10.2 16633 1lu4A 136 1.83e+01 c.47.1.10 91124 1kgsA 225 1.86e+01 a.4.6.1,c.23.1.1 68596,68597 1dgnA 89 1.89e+01 1dgnA a.77.1.3 18436 1x1iA 752 1.93e+01 1eg3A 261 2.00e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1eerA 166 2.02e+01 1eerA a.26.1.2 16846 1k0dA 260 2.02e+01 a.45.1.1,c.47.1.5 67930,67931 1guxA 218 2.10e+01 1guxA a.74.1.3 18388 1tia 279 2.29e+01 3tgl c.69.1.17 34737 1rsy 152 2.29e+01 1rsy b.7.1.2 23192 1wwzA 159 2.30e+01 1ye8A 178 2.34e+01 2br9A 234 2.34e+01 1wpuA 147 2.43e+01 2hmzA 113 2.54e+01 2mhr a.24.4.1 16564 2acjA 66 2.56e+01 1k78A 149 2.61e+01 a.4.1.5,a.4.1.5 68255,68256 1io1A 398 2.61e+01 1io1A e.32.1.1 62611 1wmqA 147 2.66e+01 1l9lA 74 2.70e+01 a.64.1.1 77827 2a11A 242 2.72e+01 1josA 128 2.75e+01 d.52.7.1 84191 1g5aA 628 2.77e+01 b.71.1.1,c.1.8.1 65152,65153 1htyA 1015 2.77e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1efyA 350 2.79e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1qb2A 109 2.80e+01 1qb2A a.36.1.1 17125 1udxA 416 2.82e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2hmqA 113 2.88e+01 2mhr a.24.4.1 16568 1f3aA 222 2.89e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1i1rB 181 2.90e+01 1i1rB a.26.1.1 61548 1fkmA 396 2.93e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 2b99A 156 2.96e+01 1lj2A 110 2.97e+01 h.1.13.2 73926 1rrmA 386 2.97e+01 e.22.1.2 105081 1p68A 102 3.01e+01 k.8.1.1 94158 2bvlA 543 3.04e+01 1ytaA 180 3.06e+01 1dlwA 116 3.14e+01 1dlyA a.1.1.1 14982 1veaA 148 3.16e+01 d.275.1.1 108529 1x3kA 152 3.17e+01 2d2sA 235 3.19e+01 1u00A 227 3.25e+01 1bzpA 153 3.29e+01 1a6m a.1.1.2 15020 1mod 154 3.37e+01 1a6m a.1.1.2 15107 1upkA 341 3.39e+01 a.118.1.15 99758 1mym 154 3.40e+01 1a6m a.1.1.2 15054 1foeA 377 3.50e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1rtxA 123 3.58e+01 a.1.1.1 97827 1n97A 389 3.64e+01 a.104.1.1 80335 1w27A 714 3.66e+01 1k9uA 78 3.73e+01 a.39.1.10 84348 2cwyA 94 3.75e+01 1huw 166 3.80e+01 1huw a.26.1.1 16831 1g8pA 350 3.86e+01 1g8pA c.37.1.20 60376 1alvA 173 3.89e+01 1alvA a.39.1.8 17370 1r6uA 437 3.90e+01 c.26.1.1 97163 1qwnA 1045 3.91e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 103m 154 3.91e+01 1a6m a.1.1.2 15124 1u6zA 513 4.00e+01 1z3xA 238 4.09e+01 1qwlA 505 4.25e+01 e.5.1.1 96483 1ikpA 613 4.25e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2bleA 367 4.26e+01 1wdcC 156 4.28e+01 1wdcC a.39.1.5 17317 1i5pA 633 4.30e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1a8y 367 4.34e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1t6uA 117 4.36e+01 a.24.22.1 106584 1kutA 230 4.40e+01 d.143.1.1 73017 1pbv 195 4.47e+01 1pbv a.118.3.1 19179 2cfuA 658 4.56e+01 1s35A 214 4.58e+01 a.7.1.1,a.7.1.1 98420,98421 1y8aA 332 4.59e+01 2axtH 66 4.65e+01 1ia6A 441 4.70e+01 a.102.1.2 76738 1r8sE 203 4.70e+01 a.118.3.1 97248 1g87A 614 4.73e+01 a.102.1.2,b.2.2.2 83275,83276 1mba 147 4.74e+01 2fal a.1.1.2 15149 1ra6A 461 4.79e+01 e.8.1.4 104879 1olsB 342 4.86e+01 c.36.1.7,c.48.1.2 93332,93333 1f4qA 165 4.90e+01 1alvA a.39.1.8 17360 1mll 154 4.91e+01 1a6m a.1.1.2 15057 2trcP 217 4.94e+01 1b9yC c.47.1.6 33051 1bqbA 301 4.97e+01 1hyt d.92.1.2 58962 2atxA 194 5.00e+01 1xeeA 91 5.01e+01 2mgb 154 5.03e+01 1a6m a.1.1.2 15102 1k8kD 300 5.14e+01 d.198.2.1,d.198.2.1 68309,68310 1si6X 282 5.14e+01 1a6m 151 5.27e+01 1a6m a.1.1.2 15018 2dlbA 80 5.40e+01 1b4pA 217 5.46e+01 a.45.1.1,c.47.1.5 83158,83159 2spl 154 5.49e+01 1a6m a.1.1.2 15047 1bf5A 545 5.50e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1or7A 194 5.53e+01 a.4.13.2,a.177.1.1 87332,87333 1v93A 296 5.54e+01 c.1.23.1 100532 1f74A 293 5.55e+01 1nal3 c.1.10.1 29079 1k6xA 352 5.55e+01 c.2.1.2 68238 2ahrA 259 5.58e+01 1axn 323 5.61e+01 1avc a.65.1.1 18149 1s7zA 117 5.61e+01 a.159.3.1 98715 1wa5B 530 5.63e+01 1s9rA 410 5.63e+01 d.126.1.4 98758 2comA 124 5.63e+01 2mgg 154 5.69e+01 1a6m a.1.1.2 15069 1ee4A 423 5.69e+01 1ee4A a.118.1.1 19128 2f6hX 419 5.77e+01 1mlg 154 5.80e+01 1a6m a.1.1.2 15104 1p2hA 571 5.86e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1dowA 205 5.88e+01 1dovA a.24.9.1 16626 1mlo 154 5.88e+01 1a6m a.1.1.2 15085 1lrzA 426 5.90e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1ji6A 589 5.94e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2bivA 243 5.95e+01 1ymmA 191 5.99e+01 1v9kA 228 6.06e+01 d.265.1.3 108449 1e39A 571 6.09e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1ad3A 452 6.17e+01 1ad3A c.82.1.1 35335 1ezjA 115 6.22e+01 1ezjA h.1.14.1 45638 2bfdB 345 6.27e+01 1x7yB 342 6.33e+01 1jae 471 6.33e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1yisA 478 6.37e+01 1n08A 163 6.38e+01 b.43.5.1 79730 1r71A 178 6.42e+01 a.4.14.1 104823 2d7vA 162 6.45e+01 1zhhB 242 6.58e+01 1vi1A 345 6.63e+01 c.77.1.4 100724 1r8mE 203 6.63e+01 a.118.3.1 97242 1nxuA 333 6.65e+01 c.122.1.1 86389 1q9iA 571 6.67e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1psrA 100 6.68e+01 1psrA a.39.1.2 17180 1y21A 282 6.68e+01 1va6A 518 6.69e+01 1xpiA 231 6.74e+01 1kssA 571 6.76e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2scpA 174 6.82e+01 2scpA a.39.1.5 17256 1v7bA 185 6.85e+01 1ab4 477 6.85e+01 1ab4 e.11.1.1 43251 1y0pA 571 6.95e+01 1ois 223 6.98e+01 1a36A e.15.1.1 43267 1xqrA 296 7.01e+01 2occH 85 7.07e+01 2occH a.51.1.1 17796 1rsgA 516 7.16e+01 1sumB 235 7.19e+01 a.7.12.1 106025 1e3aA 260 7.19e+01 1ajqA d.153.1.2 41838 1xg7A 250 7.25e+01 1gk9A 260 7.44e+01 d.153.1.2 65246 2bpa1 426 7.45e+01 2bpa1 1pbjA 125 7.66e+01 d.37.1.1,d.37.1.1 94414,94415 2d2mD 145 7.72e+01 1qo7A 394 7.76e+01 1qo7A c.69.1.11 34697 1colA 204 7.85e+01 1a87 f.1.1.1 43378 1d3vA 323 7.87e+01 1d3vA c.42.1.1 32559 2atfA 200 7.94e+01 1b7yA 350 7.99e+01 1pysA d.104.1.1 40776 1etxA 98 8.01e+01 1fipA a.4.1.12 18978 2b5hA 200 8.16e+01 1bo1A 416 8.19e+01 1bo1A d.143.1.2 41591 1mmq 170 8.21e+01 1hfc d.92.1.11 40396 1uch 230 8.38e+01 1uch d.3.1.6 37129 1d7oA 297 8.46e+01 1enp c.2.1.2 29907 2f6mB 109 8.61e+01 1xq8A 140 8.68e+01 2bszA 278 8.81e+01 1h3lA 87 8.90e+01 a.177.1.1 76639 1urjA 1136 8.96e+01