# List of top-scoring protein chains for t04-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b0b 142 2.89e+00 2fal a.1.1.2 15010 1k47A 337 3.58e+00 d.14.1.5,d.58.26.4 72040,72041 1g24A 211 4.75e+00 1g24A d.166.1.1 42270 1klxA 138 4.91e+00 a.118.18.1 77440 2a9kB 223 5.16e+00 1cpt 412 5.52e+00 1cpt a.104.1.1 18968 1sz9A 144 5.72e+00 a.118.9.4 106139 1yviA 149 6.70e+00 1guxA 218 7.41e+00 1guxA a.74.1.3 18388 1gpjA 404 7.48e+00 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1r6uA 437 7.49e+00 c.26.1.1 97163 1knqA 175 8.24e+00 c.37.1.17 72786 2cunA 410 8.84e+00 1sumB 235 9.09e+00 a.7.12.1 106025 1z2iA 358 9.10e+00 1c02A 166 9.23e+00 1qspA a.24.10.2 16633 1e9gA 286 9.82e+00 1wgjA b.40.5.1 59393 1josA 128 1.14e+01 d.52.7.1 84191 1f6dA 376 1.15e+01 1f6dA c.87.1.3 35467 1u00A 227 1.19e+01 2cwyA 94 1.42e+01 2sas 185 1.42e+01 2sas a.39.1.5 17258 1ytzT 107 1.44e+01 1sglA 209 1.44e+01 d.124.1.1 105536 1a8y 367 1.53e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1rx0A 393 1.63e+01 a.29.3.1,e.6.1.1 98007,98008 1i1rB 181 1.67e+01 1i1rB a.26.1.1 61548 1wa5B 530 1.72e+01 2d00A 109 1.75e+01 1fjgI 128 1.78e+01 1fjfI d.14.1.1 37559 1qbjA 81 1.80e+01 1qbjA a.4.5.19 16155 1or7A 194 1.81e+01 a.4.13.2,a.177.1.1 87332,87333 1efyA 350 1.86e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 2bznA 351 1.97e+01 1okcA 297 1.97e+01 f.42.1.1 93248 1fkmA 396 2.00e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1ytaA 180 2.02e+01 1u6zA 513 2.04e+01 1mlo 154 2.07e+01 1a6m a.1.1.2 15085 1mod 154 2.09e+01 1a6m a.1.1.2 15107 1lj2A 110 2.13e+01 h.1.13.2 73926 1alvA 173 2.13e+01 1alvA a.39.1.8 17370 1s35A 214 2.15e+01 a.7.1.1,a.7.1.1 98420,98421 1bzpA 153 2.15e+01 1a6m a.1.1.2 15020 1y1xA 191 2.15e+01 1xm9A 457 2.19e+01 5csmA 256 2.19e+01 5csmA a.130.1.2 19494 2spl 154 2.21e+01 1a6m a.1.1.2 15047 1io1A 398 2.26e+01 1io1A e.32.1.1 62611 1k0dA 260 2.28e+01 a.45.1.1,c.47.1.5 67930,67931 1xvhA 129 2.30e+01 1f74A 293 2.38e+01 1nal3 c.1.10.1 29079 2mgb 154 2.38e+01 1a6m a.1.1.2 15102 1vj7A 393 2.38e+01 a.211.1.1,d.218.1.8 100801,100802 1mll 154 2.40e+01 1a6m a.1.1.2 15057 2mgg 154 2.44e+01 1a6m a.1.1.2 15069 1yisA 478 2.46e+01 1dk0A 188 2.50e+01 1b2vA d.35.1.1 38530 2b99A 156 2.50e+01 1s9rA 410 2.55e+01 d.126.1.4 98758 1n08A 163 2.57e+01 b.43.5.1 79730 1ru3A 732 2.61e+01 e.26.1.3 97835 1utuA 108 2.63e+01 1ye8A 178 2.64e+01 2br9A 234 2.65e+01 1uedA 406 2.67e+01 a.104.1.1 99256 1kgsA 225 2.68e+01 a.4.6.1,c.23.1.1 68596,68597 1l9lA 74 2.71e+01 a.64.1.1 77827 1mlg 154 2.83e+01 1a6m a.1.1.2 15104 1fzcA 87 2.83e+01 1fzcA h.1.8.1 45590 2bduA 297 2.84e+01 1w33A 181 2.84e+01 1iomA 377 2.84e+01 a.103.1.1 83698 1f3aA 222 2.90e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1esc 306 2.92e+01 1esc c.23.10.1 31334 1xssA 225 3.00e+01 1g8pA 350 3.23e+01 1g8pA c.37.1.20 60376 1eg3A 261 3.30e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1n83A 270 3.30e+01 a.123.1.1 80276 2ezvA 269 3.36e+01 2c6qA 351 3.39e+01 1eerA 166 3.43e+01 1eerA a.26.1.2 16846 1mym 154 3.46e+01 1a6m a.1.1.2 15054 1sxjE 354 3.46e+01 a.80.1.1,c.37.1.20 106089,106090 2bivA 243 3.58e+01 1xeeA 91 3.60e+01 1ab4 477 3.70e+01 1ab4 e.11.1.1 43251 1mrzA 293 3.73e+01 b.43.5.1,c.26.1.3 91452,91453 2d2sA 235 3.76e+01 2atxA 194 3.85e+01 1udxA 416 3.85e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1ad3A 452 3.90e+01 1ad3A c.82.1.1 35335 1dgnA 89 3.93e+01 1dgnA a.77.1.3 18436 1k8kD 300 3.96e+01 d.198.2.1,d.198.2.1 68309,68310 1g87A 614 4.10e+01 a.102.1.2,b.2.2.2 83275,83276 1ee4A 423 4.16e+01 1ee4A a.118.1.1 19128 1e2aA 105 4.16e+01 1e2aA a.7.2.1 16322 1tia 279 4.20e+01 3tgl c.69.1.17 34737 1bqbA 301 4.22e+01 1hyt d.92.1.2 58962 103m 154 4.22e+01 1a6m a.1.1.2 15124 1vkeA 133 4.23e+01 a.152.1.2 108650 2bpa1 426 4.24e+01 2bpa1 1vhnA 318 4.27e+01 c.1.4.1 100693 1uhkA 191 4.32e+01 1on2A 142 4.34e+01 a.4.5.24,a.76.1.1 87103,87104 2csbA 519 4.40e+01 1k78A 149 4.43e+01 a.4.1.5,a.4.1.5 68255,68256 1qojA 63 4.46e+01 1qojA a.2.9.1 15716 1a6m 151 4.52e+01 1a6m a.1.1.2 15018 1t6uA 117 4.54e+01 a.24.22.1 106584 1mv8A 436 4.55e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2d7vA 162 4.58e+01 1x1iA 752 4.60e+01 1r8mE 203 4.62e+01 a.118.3.1 97242 1pbv 195 4.63e+01 1pbv a.118.3.1 19179 1bf5A 545 4.66e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1foeA 377 4.67e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1wpuA 147 4.81e+01 1wwzA 159 4.87e+01 1dlwA 116 4.96e+01 1dlyA a.1.1.1 14982 1r71A 178 4.98e+01 a.4.14.1 104823 1jilA 420 5.10e+01 c.26.1.1 66745 1yi8A 351 5.16e+01 1rrmA 386 5.17e+01 e.22.1.2 105081 1ji6A 589 5.18e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1veaA 148 5.34e+01 d.275.1.1 108529 1y8qA 346 5.42e+01 2g09A 297 5.44e+01 1xk4C 113 5.49e+01 2e2aA 105 5.50e+01 a.7.2.1 88499 1rw6A 210 5.51e+01 a.47.4.1 105113 1f4qA 165 5.59e+01 1alvA a.39.1.8 17360 2a11A 242 5.67e+01 1x3kA 152 5.70e+01 1hw1A 239 5.72e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1wn0A 145 5.73e+01 2acjA 66 5.75e+01 2f6hX 419 5.79e+01 1wy1A 172 5.82e+01 1r8sE 203 5.94e+01 a.118.3.1 97248 1huw 166 6.05e+01 1huw a.26.1.1 16831 2c5uA 375 6.11e+01 1wdcC 156 6.12e+01 1wdcC a.39.1.5 17317 1pbjA 125 6.17e+01 d.37.1.1,d.37.1.1 94414,94415 1vf1A 229 6.18e+01 2d2mD 145 6.18e+01 1l5aA 436 6.18e+01 c.43.1.2,c.43.1.2 75923,75924 2b5eA 504 6.21e+01 2b05A 246 6.28e+01 1uz3A 102 6.31e+01 2f6mB 109 6.33e+01 2dlbA 80 6.37e+01 1oi0A 124 6.40e+01 c.97.3.1 93045 1g5aA 628 6.40e+01 b.71.1.1,c.1.8.1 65152,65153 1ezjA 115 6.44e+01 1ezjA h.1.14.1 45638 1t64A 377 6.45e+01 c.42.1.2 106543 1ho8A 480 6.46e+01 1ho8A a.118.1.9 61107 1h3lA 87 6.52e+01 a.177.1.1 76639 5croA 66 6.52e+01 1orc a.35.1.2 17044 1qwlA 505 6.56e+01 e.5.1.1 96483 1v7bA 185 6.63e+01 1hh8A 213 6.69e+01 1e96B a.118.8.1 61042 1wphA 201 6.71e+01 1vin 268 6.75e+01 1vin a.74.1.1,a.74.1.1 18354,18355 1pvaA 110 6.79e+01 1a75A a.39.1.4 17207 1e39A 571 6.85e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1t4bA 367 6.92e+01 c.2.1.3,d.81.1.1 106406,106407 2gnxA 365 6.94e+01 1sl8A 191 6.98e+01 1ewqA 765 6.98e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1ia6A 441 7.05e+01 a.102.1.2 76738 1ur3M 319 7.10e+01 c.1.7.1 99806 1s0pA 176 7.18e+01 a.192.1.1 98300 1w27A 714 7.30e+01 1mtyG 162 7.31e+01 1mtyG a.23.3.1 16498 2cb2A 318 7.32e+01 1bo1A 416 7.37e+01 1bo1A d.143.1.2 41591 1nvvS 481 7.41e+01 a.117.1.1 86279 1wmqA 147 7.44e+01 1wm5A 208 7.45e+01 1x6iA 91 7.51e+01 1oi1A 221 7.57e+01 b.34.9.3,b.34.9.3 87037,87038 1y0pA 571 7.58e+01 1kp8A 547 7.58e+01 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1q9iA 571 7.64e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1kssA 571 7.65e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2fkzA 155 7.68e+01 2fm9A 215 7.72e+01 1nfvA 179 8.05e+01 a.25.1.1 85642 2hddA 61 8.05e+01 2hddA a.4.1.1 15971 1etxA 98 8.05e+01 1fipA a.4.1.12 18978 1v1rA 400 8.10e+01 c.36.1.11 108272 1gln 468 8.11e+01 1gln a.97.1.1,c.26.1.1 18752,31588 1dc1A 323 8.23e+01 1dc1A c.52.1.11 33321 1k3yA 221 8.27e+01 a.45.1.1,c.47.1.5 77245,77246 1orc 71 8.30e+01 1orc a.35.1.2 17054 1m6yA 301 8.35e+01 a.60.13.1,c.66.1.23 78716,78717 1y6lA 149 8.35e+01 2cfuA 658 8.37e+01 1oj7A 408 8.44e+01 e.22.1.2 103971 1cjcA 460 8.46e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1pa2A 306 8.46e+01 1bgp a.93.1.1 18693 1zhhB 242 8.53e+01 1v97A 1332 8.55e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1moq 368 8.58e+01 1moq c.80.1.1 35302 1r5qA 102 8.60e+01 a.186.1.1 97103 1k9uA 78 8.71e+01 a.39.1.10 84348 1tf5A 844 8.71e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1b7yA 350 8.73e+01 1pysA d.104.1.1 40776 1nkd 65 8.73e+01 1nkd a.30.1.1 16974 1xq8A 140 8.77e+01 1vpkA 378 8.79e+01 1f5qB 252 8.79e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1dwtA 153 8.80e+01 1a6m a.1.1.2 15190 1jae 471 8.93e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1em2A 229 8.97e+01 1em2A d.129.3.2 41321 1ymmA 191 8.99e+01