CreatePredAlphaCost pred_alpha2k alpha11 T0286.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0286.t04.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha06 alpha11 T0286.t06.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 8 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k 4 \
	pred_alpha04 5 \
	pred_alpha06 6 \
	constraints 10 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1

HelixConstraint D13	G18	5.
HelixConstraint S26	A38	5.
HelixConstraint W66	T81	5.
HelixConstraint N101	K118	5.
HelixConstraint I135	N151	5.
HelixConstraint G183	E205	5.


# Following are sheet constraints from try9-opt2, the model that we began trying
# to fix:
# Original constraint, we want to extend it
# SheetConstraint (T0286)T5 (T0286)K7	(T0286)S41 (T0286)D43	hbond (T0286)I6	1

# The extended constraint
SheetConstraint (T0286)T5 (T0286)G12	(T0286)S41 (T0286)Q48	hbond (T0286)I6	5

# This is the offending constraint, removed.
# SheetConstraint (T0286)G12 (T0286)D13	(T0286)G62 (T0286)H63	hbond (T0286)G12	1

SheetConstraint (T0286)K7 (T0286)G12	(T0286)D85 (T0286)W90	hbond (T0286)M9	5
SheetConstraint (T0286)D85 (T0286)L89	(T0286)V121 (T0286)V125	hbond (T0286)V87	5
SheetConstraint (T0286)F124 (T0286)D127	(T0286)V156 (T0286)V159	hbond (T0286)V125	5


# constraints to pull helix T67-I75 into desired location
Constraint	I71.CD1	V11.CB	3.0 4.5 6	1.
Constraint	I71.CD1	L89.CG	3.0 4.5 6	1.
Constraint	I71.CB	I91.CB	3.0 4.5 6	1.

Constraint	I71.CD1	M9.CE	3.0 4.5 6	1.
Constraint	I71.CD1	V11.CG1	3.0 4.5 6	1.
Constraint	I71.CD1	V87.CG1	3.0 4.5 6	1.

Constraint	L79.CD2	V87.CG2 3.0 4.5 7	1.
Constraint	L79.CD2	M9.CE	3.0 4.5 6	1.

Constraint	I68.CG2	G106.CA 3.0 3.3 5	1.